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    Rbfox2 RNA binding protein, fox-1 homolog (C. elegans) 2 [ Mus musculus (house mouse) ]

    Gene ID: 93686, updated on 26-Sep-2022

    Summary

    Official Symbol
    Rbfox2provided by MGI
    Official Full Name
    RNA binding protein, fox-1 homolog (C. elegans) 2provided by MGI
    Primary source
    MGI:MGI:1933973
    See related
    Ensembl:ENSMUSG00000033565 AllianceGenome:MGI:1933973
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Fxh; Fbm2; Rbm9; Hrnbp2
    Summary
    Enables mRNA binding activity. Involved in regulation of alternative mRNA splicing, via spliceosome and regulation of definitive erythrocyte differentiation. Acts upstream of or within several processes, including alternative mRNA splicing, via spliceosome; nervous system development; and regulation of heart rate by cardiac conduction. Located in nucleus. Is expressed in several structures, including blastocyst; brain; dorsal root ganglion; early embryo; and limb. Orthologous to human RBFOX2 (RNA binding fox-1 homolog 2). [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Broad expression in CNS E18 (RPKM 47.2), whole brain E14.5 (RPKM 43.2) and 25 other tissues See more
    Orthologs
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    See Rbfox2 in Genome Data Viewer
    Location:
    15; 15 D3
    Exon count:
    23
    Annotation release Status Assembly Chr Location
    109 current GRCm39 (GCF_000001635.27) 15 NC_000081.7 (76963190..77193058, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 15 NC_000081.6 (77078990..77308434, complement)

    Chromosome 15 - NC_000081.7Genomic Context describing neighboring genes Neighboring gene myoglobin Neighboring gene apolipoprotein L 6 Neighboring gene RIKEN cDNA 1700109K24 gene Neighboring gene predicted gene, 24753 Neighboring gene predicted gene, 53899 Neighboring gene predicted gene, 24056 Neighboring gene predicted gene, 41352 Neighboring gene predicted gene, 49436

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)

    Pathways from PubChem

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Clone Names

    • 2810460A15Rik

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables DNA-binding transcription factor binding ISO
    Inferred from Sequence Orthology
    more info
     
    enables RNA binding ISO
    Inferred from Sequence Orthology
    more info
     
    enables RNA binding ISS
    Inferred from Sequence or Structural Similarity
    more info
    PubMed 
    enables mRNA binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    enables mRNA binding IDA
    Inferred from Direct Assay
    more info
    PubMed 
    enables nucleic acid binding IEA
    Inferred from Electronic Annotation
    more info
     
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    enables transcription corepressor activity ISO
    Inferred from Sequence Orthology
    more info
     
    Process Evidence Code Pubs
    acts_upstream_of_or_within RNA splicing IEA
    Inferred from Electronic Annotation
    more info
     
    acts_upstream_of_or_within dendrite morphogenesis IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    involved_in intracellular estrogen receptor signaling pathway ISO
    Inferred from Sequence Orthology
    more info
     
    acts_upstream_of_or_within mRNA processing IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in negative regulation of DNA-templated transcription ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in nervous system development IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    acts_upstream_of_or_within neuromuscular process controlling balance IGI
    Inferred from Genetic Interaction
    more info
    PubMed 
    acts_upstream_of_or_within radial glia guided migration of Purkinje cell IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    involved_in regulation of RNA splicing IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in regulation of alternative mRNA splicing, via spliceosome IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    acts_upstream_of_or_within regulation of alternative mRNA splicing, via spliceosome IGI
    Inferred from Genetic Interaction
    more info
    PubMed 
    acts_upstream_of_or_within regulation of alternative mRNA splicing, via spliceosome IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    involved_in regulation of alternative mRNA splicing, via spliceosome IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    involved_in regulation of definitive erythrocyte differentiation IDA
    Inferred from Direct Assay
    more info
    PubMed 
    Component Evidence Code Pubs
    is_active_in cytoplasm IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    located_in nucleoplasm ISO
    Inferred from Sequence Orthology
    more info
     
    is_active_in nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    located_in nucleus IDA
    Inferred from Direct Assay
    more info
    PubMed 
    located_in nucleus ISO
    Inferred from Sequence Orthology
    more info
     

    General protein information

    Preferred Names
    RNA binding protein fox-1 homolog 2
    Names
    Fyn-binding molecule 2
    RNA-binding motif protein 9
    fox-1 homolog B
    fox-1 homolog Fxh
    hexaribonucleotide-binding protein 2

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001110827.3NP_001104297.1  RNA binding protein fox-1 homolog 2 isoform 3

      Status: VALIDATED

      Source sequence(s)
      AL591892, AL603843, AL772386
      UniProtKB/Swiss-Prot
      Q8BP71
      UniProtKB/TrEMBL
      A0A6P5QYR6
      Conserved Domains (3) summary
      cd12407
      Location:180255
      RRM_FOX1_like; RNA recognition motif in vertebrate RNA binding protein fox-1 homologs and similar proteins
      TIGR01661
      Location:37251
      ELAV_HUD_SF; ELAV/HuD family splicing factor
      pfam12414
      Location:320417
      Fox-1_C; Calcitonin gene-related peptide regulator C terminal
    2. NM_001110828.3NP_001104298.1  RNA binding protein fox-1 homolog 2 isoform 4

      See identical proteins and their annotated locations for NP_001104298.1

      Status: VALIDATED

      Source sequence(s)
      AL603843
      Consensus CDS
      CCDS49658.1
      UniProtKB/Swiss-Prot
      Q8BP71
      Related
      ENSMUSP00000130673.2, ENSMUST00000166610.8
      Conserved Domains (3) summary
      cd12407
      Location:112187
      RRM_FOX1_like; RNA recognition motif in vertebrate RNA binding protein fox-1 homologs and similar proteins
      pfam12414
      Location:256353
      Fox-1_C; Calcitonin gene-related peptide regulator C terminal
      cl25887
      Location:96262
      RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
    3. NM_001110829.3NP_001104299.1  RNA binding protein fox-1 homolog 2 isoform 5

      See identical proteins and their annotated locations for NP_001104299.1

      Status: VALIDATED

      Source sequence(s)
      AL603843
      Consensus CDS
      CCDS49657.1
      UniProtKB/Swiss-Prot
      Q8BP71
      UniProtKB/TrEMBL
      A0A6P7PY87, A0A8C6HR19
      Related
      ENSMUSP00000154233.2, ENSMUST00000227314.2
      Conserved Domains (2) summary
      cd12407
      Location:112187
      RRM_FOX1_like; RNA recognition motif in vertebrate RNA binding protein fox-1 homologs and similar proteins
      pfam12414
      Location:252350
      Fox-1_C; Calcitonin gene-related peptide regulator C terminal
    4. NM_001110830.3NP_001104300.1  RNA binding protein fox-1 homolog 2 isoform 6

      See identical proteins and their annotated locations for NP_001104300.1

      Status: VALIDATED

      Source sequence(s)
      AL603843
      Consensus CDS
      CCDS88798.1
      UniProtKB/Swiss-Prot
      Q8BP71
      UniProtKB/TrEMBL
      A0A6P5QYS3
      Related
      ENSMUSP00000153751.2, ENSMUST00000228087.2
      Conserved Domains (3) summary
      TIGR01645
      Location:96248
      half-pint; poly-U binding splicing factor, half-pint family
      cd12407
      Location:112187
      RRM_FOX1_like; RNA recognition motif in vertebrate RNA binding protein fox-1 homologs and similar proteins
      pfam12414
      Location:252349
      Fox-1_C; Calcitonin gene-related peptide regulator C terminal
    5. NM_001286417.2NP_001273346.1  RNA binding protein fox-1 homolog 2 isoform 7

      Status: VALIDATED

      Source sequence(s)
      AL603843
      Consensus CDS
      CCDS88797.1
      UniProtKB/Swiss-Prot
      Q8BP71
      UniProtKB/TrEMBL
      A0A2K6EDK7, A0A8C6MZP3
      Related
      ENSMUSP00000129372.3, ENSMUST00000111581.4
      Conserved Domains (2) summary
      cd12407
      Location:112187
      RRM_FOX1_like; RNA recognition motif in vertebrate RNA binding protein fox-1 homologs and similar proteins
      pfam12414
      Location:252300
      Fox-1_C; Calcitonin gene-related peptide regulator C terminal
    6. NM_001286418.2NP_001273347.1  RNA binding protein fox-1 homolog 2 isoform 8

      See identical proteins and their annotated locations for NP_001273347.1

      Status: VALIDATED

      Source sequence(s)
      AL603843
      Consensus CDS
      CCDS88795.1
      UniProtKB/Swiss-Prot
      Q8BP71
      Related
      ENSMUSP00000154810.2, ENSMUST00000227930.2
      Conserved Domains (1) summary
      pfam12414
      Location:158255
      Fox-1_C; Calcitonin gene-related peptide regulator C terminal
    7. NM_001286419.2NP_001273348.1  RNA binding protein fox-1 homolog 2 isoform 9

      See identical proteins and their annotated locations for NP_001273348.1

      Status: VALIDATED

      Source sequence(s)
      AL603843
      Consensus CDS
      CCDS88796.1
      UniProtKB/Swiss-Prot
      Q8BP71
      UniProtKB/TrEMBL
      A0A6P7Q289
      Related
      ENSMUSP00000154209.2, ENSMUST00000227533.2
      Conserved Domains (3) summary
      COG0724
      Location:70145
      RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
      pfam12414
      Location:220318
      Fox-1_C; Calcitonin gene-related peptide regulator C terminal
      cl17169
      Location:111150
      RRM_SF; RNA recognition motif (RRM) superfamily
    8. NM_001358770.2NP_001345699.1  RNA binding protein fox-1 homolog 2 isoform 10

      Status: VALIDATED

      Source sequence(s)
      AL591892, AL603843
      UniProtKB/TrEMBL
      A0A6P7PY77
      Conserved Domains (3) summary
      TIGR01645
      Location:118270
      half-pint; poly-U binding splicing factor, half-pint family
      cd12407
      Location:134209
      RRM_FOX1_like; RNA recognition motif in vertebrate RNA binding protein fox-1 homologs and similar proteins
      pfam12414
      Location:274371
      Fox-1_C; Calcitonin gene-related peptide regulator C terminal
    9. NM_001358772.2NP_001345701.1  RNA binding protein fox-1 homolog 2 isoform 12

      Status: VALIDATED

      Source sequence(s)
      AL591892, AL603843
      Conserved Domains (2) summary
      cd12407
      Location:134209
      RRM_FOX1_like; RNA recognition motif in vertebrate RNA binding protein fox-1 homologs and similar proteins
      pfam12414
      Location:274331
      Fox-1_C; Calcitonin gene-related peptide regulator C terminal
    10. NM_001412007.1NP_001398936.1  RNA binding protein fox-1 homolog 2 isoform 13

      Status: VALIDATED

      Source sequence(s)
      AL591892, AL603843, AL772386
    11. NM_001412008.1NP_001398937.1  RNA binding protein fox-1 homolog 2 isoform 14

      Status: VALIDATED

      Source sequence(s)
      AL591892, AL603843, AL772386
    12. NM_001412009.1NP_001398938.1  RNA binding protein fox-1 homolog 2 isoform 15

      Status: VALIDATED

      Source sequence(s)
      AL603843, AL772386
    13. NM_001412010.1NP_001398939.1  RNA binding protein fox-1 homolog 2 isoform 16

      Status: VALIDATED

      Source sequence(s)
      AL603843, AL772386
    14. NM_001412011.1NP_001398940.1  RNA binding protein fox-1 homolog 2 isoform 12

      Status: VALIDATED

      Source sequence(s)
      AL603843, AL772386
    15. NM_001412012.1NP_001398941.1  RNA binding protein fox-1 homolog 2 isoform 17

      Status: VALIDATED

      Source sequence(s)
      AL603843, AL772386
    16. NM_001412013.1NP_001398942.1  RNA binding protein fox-1 homolog 2 isoform 18

      Status: VALIDATED

      Source sequence(s)
      AL603843, AL772386
    17. NM_001412014.1NP_001398943.1  RNA binding protein fox-1 homolog 2 isoform 19

      Status: VALIDATED

      Source sequence(s)
      AL591892, AL603843
    18. NM_001412015.1NP_001398944.1  RNA binding protein fox-1 homolog 2 isoform 20

      Status: VALIDATED

      Source sequence(s)
      AL591892, AL603843
    19. NM_001412016.1NP_001398945.1  RNA binding protein fox-1 homolog 2 isoform 21

      Status: VALIDATED

      Source sequence(s)
      AL591892, AL603843
    20. NM_001412017.1NP_001398946.1  RNA binding protein fox-1 homolog 2 isoform 22

      Status: VALIDATED

      Source sequence(s)
      AL591892, AL603843
    21. NM_001412018.1NP_001398947.1  RNA binding protein fox-1 homolog 2 isoform 23

      Status: VALIDATED

      Source sequence(s)
      AL591892, AL603843
    22. NM_001412019.1NP_001398948.1  RNA binding protein fox-1 homolog 2 isoform 24

      Status: VALIDATED

      Source sequence(s)
      AL591892, AL603843
    23. NM_001412020.1NP_001398949.1  RNA binding protein fox-1 homolog 2 isoform 25

      Status: VALIDATED

      Source sequence(s)
      AL591892, AL603843
    24. NM_001412021.1NP_001398950.1  RNA binding protein fox-1 homolog 2 isoform 26

      Status: VALIDATED

      Source sequence(s)
      AL591892, AL603843
    25. NM_001412022.1NP_001398951.1  RNA binding protein fox-1 homolog 2 isoform 27

      Status: VALIDATED

      Source sequence(s)
      AL603843
    26. NM_001412023.1NP_001398952.1  RNA binding protein fox-1 homolog 2 isoform 28

      Status: VALIDATED

      Source sequence(s)
      AL603843
    27. NM_001412024.1NP_001398953.1  RNA binding protein fox-1 homolog 2 isoform 29

      Status: VALIDATED

      Source sequence(s)
      AL603843
    28. NM_001412025.1NP_001398954.1  RNA binding protein fox-1 homolog 2 isoform 30

      Status: VALIDATED

      Source sequence(s)
      AL603843
    29. NM_001412026.1NP_001398955.1  RNA binding protein fox-1 homolog 2 isoform 31

      Status: VALIDATED

      Source sequence(s)
      AL603843
    30. NM_001412027.1NP_001398956.1  RNA binding protein fox-1 homolog 2 isoform 6

      Status: VALIDATED

      Source sequence(s)
      AL603843
    31. NM_001412028.1NP_001398957.1  RNA binding protein fox-1 homolog 2 isoform 32

      Status: VALIDATED

      Source sequence(s)
      AL603843
    32. NM_001412029.1NP_001398958.1  RNA binding protein fox-1 homolog 2 isoform 33

      Status: VALIDATED

      Source sequence(s)
      AL603843
    33. NM_001412030.1NP_001398959.1  RNA binding protein fox-1 homolog 2 isoform 34

      Status: VALIDATED

      Source sequence(s)
      AL603843
    34. NM_001412031.1NP_001398960.1  RNA binding protein fox-1 homolog 2 isoform 35

      Status: VALIDATED

      Source sequence(s)
      AL603843
    35. NM_001412032.1NP_001398961.1  RNA binding protein fox-1 homolog 2 isoform 36

      Status: VALIDATED

      Source sequence(s)
      AL603843
    36. NM_053104.7NP_444334.3  RNA binding protein fox-1 homolog 2 isoform 1

      See identical proteins and their annotated locations for NP_444334.3

      Status: VALIDATED

      Source sequence(s)
      AL591892, AL603843, AL772386
      Consensus CDS
      CCDS49659.1
      UniProtKB/Swiss-Prot
      Q8BP71, Q923W8
      UniProtKB/TrEMBL
      A0A6P5R847
      Related
      ENSMUSP00000130739.2, ENSMUST00000171751.10
      Conserved Domains (3) summary
      cd12407
      Location:180255
      RRM_FOX1_like; RNA recognition motif in vertebrate RNA binding protein fox-1 homologs and similar proteins
      TIGR01661
      Location:37251
      ELAV_HUD_SF; ELAV/HuD family splicing factor
      pfam12414
      Location:324421
      Fox-1_C; Calcitonin gene-related peptide regulator C terminal
    37. NM_175387.4NP_780596.1  RNA binding protein fox-1 homolog 2 isoform 2

      See identical proteins and their annotated locations for NP_780596.1

      Status: VALIDATED

      Source sequence(s)
      AL591892, AL603843, AL772386
      Consensus CDS
      CCDS27598.1
      UniProtKB/Swiss-Prot
      Q8BP71
      UniProtKB/TrEMBL
      A0A6P5R852
      Related
      ENSMUSP00000048056.6, ENSMUST00000048145.13
      Conserved Domains (2) summary
      cd12407
      Location:180255
      RRM_FOX1_like; RNA recognition motif in vertebrate RNA binding protein fox-1 homologs and similar proteins
      pfam12414
      Location:320368
      Fox-1_C; Calcitonin gene-related peptide regulator C terminal

    RNA

    1. NR_177995.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL603843
    2. NR_177996.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL603843
    3. NR_177997.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL603843

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000081.7 Reference GRCm39 C57BL/6J

      Range
      76963190..77193058 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_030248832.2XP_030104692.1  RNA binding protein fox-1 homolog 2 isoform X13

      Conserved Domains (2) summary
      cd12407
      Location:162237
      RRM_FOX1_like; RNA recognition motif in vertebrate RNA binding protein fox-1 homologs and similar proteins
      pfam12414
      Location:302399
      Fox-1_C; Calcitonin gene-related peptide regulator C terminal
    2. XM_030248830.2XP_030104690.1  RNA binding protein fox-1 homolog 2 isoform X10

      Conserved Domains (2) summary
      cd12407
      Location:162237
      RRM_FOX1_like; RNA recognition motif in vertebrate RNA binding protein fox-1 homologs and similar proteins
      pfam12414
      Location:302359
      Fox-1_C; Calcitonin gene-related peptide regulator C terminal
    3. XM_030248836.2XP_030104696.1  RNA binding protein fox-1 homolog 2 isoform X20

      Conserved Domains (2) summary
      pfam12414
      Location:272369
      Fox-1_C; Calcitonin gene-related peptide regulator C terminal
      cl17169
      Location:163202
      RRM_SF; RNA recognition motif (RRM) superfamily
    4. XM_030248831.2XP_030104691.1  RNA binding protein fox-1 homolog 2 isoform X12

      Conserved Domains (2) summary
      cd12407
      Location:163238
      RRM_FOX1_like; RNA recognition motif in vertebrate RNA binding protein fox-1 homologs and similar proteins
      pfam12414
      Location:303400
      Fox-1_C; Calcitonin gene-related peptide regulator C terminal
    5. XM_030248829.2XP_030104689.1  RNA binding protein fox-1 homolog 2 isoform X9

      Conserved Domains (2) summary
      cd12407
      Location:163238
      RRM_FOX1_like; RNA recognition motif in vertebrate RNA binding protein fox-1 homologs and similar proteins
      pfam12414
      Location:303360
      Fox-1_C; Calcitonin gene-related peptide regulator C terminal
    6. XM_006521587.4XP_006521650.1  RNA binding protein fox-1 homolog 2 isoform X15

      UniProtKB/TrEMBL
      A0A6P7Q251
      Conserved Domains (3) summary
      COG0724
      Location:138213
      RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
      pfam12414
      Location:288386
      Fox-1_C; Calcitonin gene-related peptide regulator C terminal
      cl17169
      Location:179218
      RRM_SF; RNA recognition motif (RRM) superfamily
    7. XM_036159654.1XP_036015547.1  RNA binding protein fox-1 homolog 2 isoform X7

      Conserved Domains (2) summary
      pfam12414
      Location:319417
      Fox-1_C; Calcitonin gene-related peptide regulator C terminal
      cd12407
      Location:179254
      RRM_FOX1_like; RNA recognition motif (RRM) found in vertebrate RNA binding protein fox-1 homologs and similar proteins
    8. XM_006521577.4XP_006521640.1  RNA binding protein fox-1 homolog 2 isoform X8

      UniProtKB/TrEMBL
      A0A6P5RB53
      Conserved Domains (2) summary
      cd12407
      Location:179254
      RRM_FOX1_like; RNA recognition motif in vertebrate RNA binding protein fox-1 homologs and similar proteins
      pfam12414
      Location:319416
      Fox-1_C; Calcitonin gene-related peptide regulator C terminal
    9. XM_006521570.4XP_006521633.1  RNA binding protein fox-1 homolog 2 isoform X4

      UniProtKB/TrEMBL
      A0A6P7QKQ5
      Conserved Domains (2) summary
      cd12407
      Location:179254
      RRM_FOX1_like; RNA recognition motif in vertebrate RNA binding protein fox-1 homologs and similar proteins
      pfam12414
      Location:319376
      Fox-1_C; Calcitonin gene-related peptide regulator C terminal
    10. XM_036159656.1XP_036015549.1  RNA binding protein fox-1 homolog 2 isoform X18

      Conserved Domains (2) summary
      pfam12414
      Location:289337
      Fox-1_C; Calcitonin gene-related peptide regulator C terminal
      cl17169
      Location:180219
      RRM_SF; RNA recognition motif (RRM) superfamily
    11. XM_036159655.1XP_036015548.1  RNA binding protein fox-1 homolog 2 isoform X14

      Conserved Domains (2) summary
      pfam12414
      Location:289387
      Fox-1_C; Calcitonin gene-related peptide regulator C terminal
      cl17169
      Location:180219
      RRM_SF; RNA recognition motif (RRM) superfamily
    12. XM_006521576.4XP_006521639.1  RNA binding protein fox-1 homolog 2 isoform X6

      UniProtKB/TrEMBL
      A0A6P7Q232
      Conserved Domains (3) summary
      cd12407
      Location:180255
      RRM_FOX1_like; RNA recognition motif in vertebrate RNA binding protein fox-1 homologs and similar proteins
      TIGR01661
      Location:37251
      ELAV_HUD_SF; ELAV/HuD family splicing factor
      pfam12414
      Location:320418
      Fox-1_C; Calcitonin gene-related peptide regulator C terminal
    13. XM_017316809.3XP_017172298.1  RNA binding protein fox-1 homolog 2 isoform X3

      UniProtKB/TrEMBL
      A0A6P7QFR3
      Conserved Domains (2) summary
      cd12407
      Location:180255
      RRM_FOX1_like; RNA recognition motif in vertebrate RNA binding protein fox-1 homologs and similar proteins
      pfam12414
      Location:320377
      Fox-1_C; Calcitonin gene-related peptide regulator C terminal
    14. XM_006521580.4XP_006521643.1  RNA binding protein fox-1 homolog 2 isoform X11

      UniProtKB/TrEMBL
      A0A6P5R5R0
      Conserved Domains (3) summary
      TIGR01628
      Location:168421
      PABP-1234; polyadenylate binding protein, human types 1, 2, 3, 4 family
      cd12407
      Location:180255
      RRM_FOX1_like; RNA recognition motif in vertebrate RNA binding protein fox-1 homologs and similar proteins
      pfam12414
      Location:324372
      Fox-1_C; Calcitonin gene-related peptide regulator C terminal
    15. XM_006521574.4XP_006521637.1  RNA binding protein fox-1 homolog 2 isoform X5

      UniProtKB/TrEMBL
      A0A6P7QI90
      Conserved Domains (3) summary
      cd12407
      Location:180255
      RRM_FOX1_like; RNA recognition motif in vertebrate RNA binding protein fox-1 homologs and similar proteins
      TIGR01661
      Location:37251
      ELAV_HUD_SF; ELAV/HuD family splicing factor
      pfam12414
      Location:324422
      Fox-1_C; Calcitonin gene-related peptide regulator C terminal
    16. XM_006521568.4XP_006521631.1  RNA binding protein fox-1 homolog 2 isoform X1

      Conserved Domains (3) summary
      TIGR01645
      Location:164330
      half-pint; poly-U binding splicing factor, half-pint family
      cd12407
      Location:180255
      RRM_FOX1_like; RNA recognition motif in vertebrate RNA binding protein fox-1 homologs and similar proteins
      pfam12414
      Location:324380
      Fox-1_C; Calcitonin gene-related peptide regulator C terminal
    17. XM_006521569.4XP_006521632.1  RNA binding protein fox-1 homolog 2 isoform X2

      UniProtKB/TrEMBL
      A0A6P7Q215
      Conserved Domains (3) summary
      TIGR01645
      Location:164330
      half-pint; poly-U binding splicing factor, half-pint family
      cd12407
      Location:180255
      RRM_FOX1_like; RNA recognition motif in vertebrate RNA binding protein fox-1 homologs and similar proteins
      pfam12414
      Location:324381
      Fox-1_C; Calcitonin gene-related peptide regulator C terminal
    18. XM_030248835.2XP_030104695.1  RNA binding protein fox-1 homolog 2 isoform X19

      UniProtKB/TrEMBL
      A0A6P7QFV0
      Conserved Domains (3) summary
      TIGR01645
      Location:117269
      half-pint; poly-U binding splicing factor, half-pint family
      cd12407
      Location:133208
      RRM_FOX1_like; RNA recognition motif in vertebrate RNA binding protein fox-1 homologs and similar proteins
      pfam12414
      Location:273370
      Fox-1_C; Calcitonin gene-related peptide regulator C terminal
    19. XM_036159660.1XP_036015553.1  RNA binding protein fox-1 homolog 2 isoform X31

      Conserved Domains (2) summary
      pfam12414
      Location:243340
      Fox-1_C; Calcitonin gene-related peptide regulator C terminal
      cl17169
      Location:134173
      RRM_SF; RNA recognition motif (RRM) superfamily
    20. XM_030248833.2XP_030104693.1  RNA binding protein fox-1 homolog 2 isoform X16

      UniProtKB/TrEMBL
      A0A8C6HQV4
      Conserved Domains (2) summary
      cd12407
      Location:134209
      RRM_FOX1_like; RNA recognition motif in vertebrate RNA binding protein fox-1 homologs and similar proteins
      pfam12414
      Location:274331
      Fox-1_C; Calcitonin gene-related peptide regulator C terminal
    21. XM_030248839.2XP_030104699.1  RNA binding protein fox-1 homolog 2 isoform X23

      Conserved Domains (2) summary
      cd12407
      Location:134209
      RRM_FOX1_like; RNA recognition motif in vertebrate RNA binding protein fox-1 homologs and similar proteins
      pfam12414
      Location:274322
      Fox-1_C; Calcitonin gene-related peptide regulator C terminal
    22. XM_030248841.2XP_030104701.1  RNA binding protein fox-1 homolog 2 isoform X25

      Conserved Domains (2) summary
      cd12407
      Location:133208
      RRM_FOX1_like; RNA recognition motif in vertebrate RNA binding protein fox-1 homologs and similar proteins
      pfam12414
      Location:273321
      Fox-1_C; Calcitonin gene-related peptide regulator C terminal
    23. XM_030248834.2XP_030104694.1  RNA binding protein fox-1 homolog 2 isoform X17

      Conserved Domains (2) summary
      cd12407
      Location:133208
      RRM_FOX1_like; RNA recognition motif in vertebrate RNA binding protein fox-1 homologs and similar proteins
      pfam12414
      Location:273330
      Fox-1_C; Calcitonin gene-related peptide regulator C terminal
    24. XM_036159659.1XP_036015552.1  RNA binding protein fox-1 homolog 2 isoform X29

      Conserved Domains (3) summary
      TIGR01645
      Location:91243
      half-pint; poly-U binding splicing factor, half-pint family
      pfam12414
      Location:247345
      Fox-1_C; Calcitonin gene-related peptide regulator C terminal
      cd12407
      Location:107182
      RRM_FOX1_like; RNA recognition motif (RRM) found in vertebrate RNA binding protein fox-1 homologs and similar proteins
    25. XM_036159658.1XP_036015551.1  RNA binding protein fox-1 homolog 2 isoform X28

      Conserved Domains (3) summary
      TIGR01645
      Location:92244
      half-pint; poly-U binding splicing factor, half-pint family
      pfam12414
      Location:248346
      Fox-1_C; Calcitonin gene-related peptide regulator C terminal
      cd12407
      Location:108183
      RRM_FOX1_like; RNA recognition motif (RRM) found in vertebrate RNA binding protein fox-1 homologs and similar proteins
    26. XM_036159657.1XP_036015550.1  RNA binding protein fox-1 homolog 2 isoform X24

      Conserved Domains (3) summary
      TIGR01645
      Location:102254
      half-pint; poly-U binding splicing factor, half-pint family
      pfam12414
      Location:258356
      Fox-1_C; Calcitonin gene-related peptide regulator C terminal
      cd12407
      Location:118193
      RRM_FOX1_like; RNA recognition motif (RRM) found in vertebrate RNA binding protein fox-1 homologs and similar proteins
    27. XM_006521593.5XP_006521656.1  RNA binding protein fox-1 homolog 2 isoform X32

      UniProtKB/TrEMBL
      A0A6P7QIA8
      Conserved Domains (2) summary
      cd12407
      Location:112187
      RRM_FOX1_like; RNA recognition motif in vertebrate RNA binding protein fox-1 homologs and similar proteins
      pfam12414
      Location:252300
      Fox-1_C; Calcitonin gene-related peptide regulator C terminal
    28. XM_030248846.2XP_030104706.1  RNA binding protein fox-1 homolog 2 isoform X33

      Conserved Domains (2) summary
      cd12407
      Location:111186
      RRM_FOX1_like; RNA recognition motif in vertebrate RNA binding protein fox-1 homologs and similar proteins
      pfam12414
      Location:251299
      Fox-1_C; Calcitonin gene-related peptide regulator C terminal
    29. XM_030248843.2XP_030104703.1  RNA binding protein fox-1 homolog 2 isoform X26

      Conserved Domains (2) summary
      cd12407
      Location:111186
      RRM_FOX1_like; RNA recognition motif in vertebrate RNA binding protein fox-1 homologs and similar proteins
      pfam12414
      Location:251349
      Fox-1_C; Calcitonin gene-related peptide regulator C terminal
    30. XM_030248844.2XP_030104704.1  RNA binding protein fox-1 homolog 2 isoform X27

      UniProtKB/TrEMBL
      A0A6P5RB59
      Conserved Domains (3) summary
      TIGR01645
      Location:95247
      half-pint; poly-U binding splicing factor, half-pint family
      cd12407
      Location:111186
      RRM_FOX1_like; RNA recognition motif in vertebrate RNA binding protein fox-1 homologs and similar proteins
      pfam12414
      Location:251348
      Fox-1_C; Calcitonin gene-related peptide regulator C terminal
    31. XM_030248838.2XP_030104698.1  RNA binding protein fox-1 homolog 2 isoform X22

      Conserved Domains (3) summary
      TIGR01645
      Location:95247
      half-pint; poly-U binding splicing factor, half-pint family
      cd12407
      Location:111186
      RRM_FOX1_like; RNA recognition motif in vertebrate RNA binding protein fox-1 homologs and similar proteins
      pfam12414
      Location:251308
      Fox-1_C; Calcitonin gene-related peptide regulator C terminal
    32. XM_030248847.2XP_030104707.1  RNA binding protein fox-1 homolog 2 isoform X34

      Conserved Domains (2) summary
      pfam12414
      Location:221278
      Fox-1_C; Calcitonin gene-related peptide regulator C terminal
      cl17169
      Location:112151
      RRM_SF; RNA recognition motif (RRM) superfamily
    33. XM_030248837.2XP_030104697.1  RNA binding protein fox-1 homolog 2 isoform X21

      UniProtKB/TrEMBL
      A0A6P7QKR5, A0A8C6HS37
      Conserved Domains (2) summary
      cd12407
      Location:112187
      RRM_FOX1_like; RNA recognition motif in vertebrate RNA binding protein fox-1 homologs and similar proteins
      pfam12414
      Location:252309
      Fox-1_C; Calcitonin gene-related peptide regulator C terminal
    34. XM_030248849.1XP_030104709.1  RNA binding protein fox-1 homolog 2 isoform X35

      Conserved Domains (3) summary
      TIGR01645
      Location:76228
      half-pint; poly-U binding splicing factor, half-pint family
      cd12407
      Location:92167
      RRM_FOX1_like; RNA recognition motif in vertebrate RNA binding protein fox-1 homologs and similar proteins
      pfam12414
      Location:232329
      Fox-1_C; Calcitonin gene-related peptide regulator C terminal
    35. XM_030248845.1XP_030104705.1  RNA binding protein fox-1 homolog 2 isoform X30

      Conserved Domains (3) summary
      TIGR01645
      Location:76228
      half-pint; poly-U binding splicing factor, half-pint family
      cd12407
      Location:92167
      RRM_FOX1_like; RNA recognition motif in vertebrate RNA binding protein fox-1 homologs and similar proteins
      pfam12414
      Location:232289
      Fox-1_C; Calcitonin gene-related peptide regulator C terminal
    36. XM_030248852.2XP_030104712.1  RNA binding protein fox-1 homolog 2 isoform X36

      Related
      ENSMUSP00000154522.2, ENSMUST00000228558.2
      Conserved Domains (2) summary
      cd12407
      Location:134209
      RRM_FOX1_like; RNA recognition motif in vertebrate RNA binding protein fox-1 homologs and similar proteins
      pfam12414
      Location:274318
      Fox-1_C; Calcitonin gene-related peptide regulator C terminal

    RNA

    1. XR_003951446.2 RNA Sequence

    2. XR_001781584.3 RNA Sequence

    3. XR_384057.4 RNA Sequence

    4. XR_004938883.1 RNA Sequence

    5. XR_003951448.2 RNA Sequence

    6. XR_003951450.2 RNA Sequence

    7. XR_003951449.2 RNA Sequence

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_001358771.1: Suppressed sequence

      Description
      NM_001358771.1: This RefSeq was removed because currently there is insufficient support for the transcript and the protein.