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    SNHG3 small nucleolar RNA host gene 3 [ Homo sapiens (human) ]

    Gene ID: 8420, updated on 9-Jan-2022

    Summary

    Official Symbol
    SNHG3provided by HGNC
    Official Full Name
    small nucleolar RNA host gene 3provided by HGNC
    Primary source
    HGNC:HGNC:10118
    See related
    Ensembl:ENSG00000242125 MIM:603238
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    U17HG; RNU17C; RNU17D; U17HG-A; U17HG-AB; NCRNA00014
    Expression
    Ubiquitous expression in bone marrow (RPKM 18.7), appendix (RPKM 11.0) and 24 other tissues See more
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    Genomic context

    See SNHG3 in Genome Data Viewer
    Location:
    1p35.3
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    109.20211119 current GRCh38.p13 (GCF_000001405.39) 1 NC_000001.11 (28505943..28510892)
    105.20201022 previous assembly GRCh37.p13 (GCF_000001405.25) 1 NC_000001.10 (28832455..28837404)

    Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene phosphatase and actin regulator 4 Neighboring gene Sharpr-MPRA regulatory region 2241 Neighboring gene RNA, U6atac small nuclear 27, pseudogene Neighboring gene Sharpr-MPRA regulatory region 7965 Neighboring gene small nucleolar RNA, H/ACA box 73A Neighboring gene small nucleolar RNA, H/ACA box 73B Neighboring gene regulator of chromosome condensation 1 Neighboring gene peroxiredoxin 3 pseudogene 2 Neighboring gene Sharpr-MPRA regulatory region 11844 Neighboring gene tRNA selenocysteine 1 associated protein 1

    Genomic regions, transcripts, and products

    Expression

    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Readthrough RCC1

    Readthrough gene: RCC1

    Other Names

    • U17 small nucleolar RNA host
    • small nucleolar RNA host gene (non-protein coding) 3
    • small nucleolar RNA host gene 3 (non-protein coding)

    Clone Names

    • FLJ18619

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_002909.2 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) lacks an internal exon, compared to variant 1.
      Source sequence(s)
      AJ006835, AL513497
      Related
      ENST00000413987.1
    2. NR_036473.1 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) represents the longer transcript.
      Source sequence(s)
      AJ006835, AL513497, DA135739

    RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20211119

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p13 Primary Assembly

    Genomic

    1. NC_000001.11 Reference GRCh38.p13 Primary Assembly

      Range
      28505943..28510892
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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