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    WDR54 WD repeat domain 54 [ Homo sapiens (human) ]

    Gene ID: 84058, updated on 7-Jul-2024

    Summary

    Official Symbol
    WDR54provided by HGNC
    Official Full Name
    WD repeat domain 54provided by HGNC
    Primary source
    HGNC:HGNC:25770
    See related
    Ensembl:ENSG00000005448 MIM:620826; AllianceGenome:HGNC:25770
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Summary
    Enables protein homodimerization activity. Involved in negative regulation of receptor internalization; regulation of MAPK cascade; and regulation of epidermal growth factor receptor signaling pathway. Located in vesicle. [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Broad expression in testis (RPKM 18.8), lung (RPKM 6.6) and 23 other tissues See more
    Orthologs
    NEW
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    Try the new Transcript table

    Genomic context

    See WDR54 in Genome Data Viewer
    Location:
    2p13.1
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 2 NC_000002.12 (74421730..74425755)
    RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 2 NC_060926.1 (74430287..74434312)
    105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 2 NC_000002.11 (74648857..74652882)

    Chromosome 2 - NC_000002.12Genomic Context describing neighboring genes Neighboring gene dynactin subunit 1 Neighboring gene DCTN1 antisense RNA 1 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 16054 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 11658 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:74619101-74619643 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:74619644-74620185 Neighboring gene chromosome 2 open reading frame 81 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 11659 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 16055 Neighboring gene high mobility group AT-hook 1 pseudogene 8 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:74653567-74654066 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:74663701-74664380 Neighboring gene rhotekin Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:74666515-74667252 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 11660 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 11661 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 11662 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 16056 Neighboring gene INO80B-WBP1 readthrough (NMD candidate) Neighboring gene ATAC-STARR-seq lymphoblastoid active region 16057 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 11663 Neighboring gene H3K27ac hESC enhancer GRCh37_chr2:74684936-74685442 Neighboring gene INO80 complex subunit B

    Genomic regions, transcripts, and products

    Expression

    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Clone Names

    • FLJ12953

    Gene Ontology Provided by GOA

    Function Evidence Code Pubs
    enables protein homodimerization activity IDA
    Inferred from Direct Assay
    more info
    PubMed 
    Component Evidence Code Pubs
    is_active_in axoneme IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    located_in intracellular membrane-bounded organelle IDA
    Inferred from Direct Assay
    more info
     
    located_in vesicle IDA
    Inferred from Direct Assay
    more info
    PubMed 

    General protein information

    Preferred Names
    WD repeat-containing protein 54

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001320823.2NP_001307752.1  WD repeat-containing protein 54 isoform a

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) encodes the longest isoform (a).
      Source sequence(s)
      AI203710, AK023015, BG024606, BI855898
      UniProtKB/Swiss-Prot
      Q9H977
      Conserved Domains (3) summary
      COG2319
      Location:146347
      WD40; WD40 repeat [General function prediction only]
      sd00039
      Location:87128
      7WD40; WD40 repeat [structural motif]
      cl02567
      Location:144295
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    2. NM_001320824.2NP_001307753.1  WD repeat-containing protein 54 isoform b

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) uses two alternate splice junctions compared to variant 1. The resulting isoform (b) is shorter at the N-terminus compared to isoform a. Variants 2 and 3 both encode the same isoform (b).
      Source sequence(s)
      AI203710, AK023015, BG024606, HY088750
      Consensus CDS
      CCDS1940.1
      UniProtKB/Swiss-Prot
      B9A049, D6W5I3, Q53H85, Q86V45, Q9H977
      Related
      ENST00000480089.5
      Conserved Domains (2) summary
      COG2319
      Location:131332
      WD40; WD40 repeat [General function prediction only]
      sd00039
      Location:72113
      7WD40; WD40 repeat [structural motif]
    3. NM_001320825.2NP_001307754.1  WD repeat-containing protein 54 isoform c

      Status: VALIDATED

      Description
      Transcript Variant: This variant (4) differs in the 5' UTR and coding sequence and in the 3' UTR and coding sequence compared to variant 1. The resulting isoform (c) lacks an alternate N-terminal segment and has a shorter and distinct C-terminus compared to isoform a.
      Source sequence(s)
      AC005041, AI203710, AK023015, CD249537
      Consensus CDS
      CCDS82473.1
      UniProtKB/Swiss-Prot
      Q9H977
      UniProtKB/TrEMBL
      B9A049
      Related
      ENSP00000387236.1, ENST00000409791.5
      Conserved Domains (2) summary
      sd00039
      Location:2361
      7WD40; WD40 repeat [structural motif]
      cl25539
      Location:77228
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    4. NM_032118.4NP_115494.1  WD repeat-containing protein 54 isoform b

      See identical proteins and their annotated locations for NP_115494.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (3) uses an alternate splice junction compared to variant 1. The resulting isoform (b) is shorter at the N-terminus compared to isoform a. Variants 2 and 3 both encode the same isoform (b).
      Source sequence(s)
      AI203710, AK023015
      Consensus CDS
      CCDS1940.1
      UniProtKB/Swiss-Prot
      B9A049, D6W5I3, Q53H85, Q86V45, Q9H977
      Related
      ENSP00000006526.6, ENST00000348227.4
      Conserved Domains (2) summary
      COG2319
      Location:131332
      WD40; WD40 repeat [General function prediction only]
      sd00039
      Location:72113
      7WD40; WD40 repeat [structural motif]

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000002.12 Reference GRCh38.p14 Primary Assembly

      Range
      74421730..74425755
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_017005064.2XP_016860553.1  WD repeat-containing protein 54 isoform X1

      Conserved Domains (3) summary
      COG2319
      Location:79280
      WD40; WD40 repeat [General function prediction only]
      sd00039
      Location:2361
      7WD40; WD40 repeat [structural motif]
      cl02567
      Location:77228
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    2. XM_047445958.1XP_047301914.1  WD repeat-containing protein 54 isoform X2

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060926.1 Alternate T2T-CHM13v2.0

      Range
      74430287..74434312
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_054344113.1XP_054200088.1  WD repeat-containing protein 54 isoform X1

    2. XM_054344114.1XP_054200089.1  WD repeat-containing protein 54 isoform X2