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    Cstf2t cleavage stimulation factor, 3' pre-RNA subunit 2, tau [ Mus musculus (house mouse) ]

    Gene ID: 83410, updated on 31-Jan-2019

    Summary

    Official Symbol
    Cstf2tprovided by MGI
    Official Full Name
    cleavage stimulation factor, 3' pre-RNA subunit 2, tauprovided by MGI
    Primary source
    MGI:MGI:1932622
    See related
    Ensembl:ENSMUSG00000053536
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    64kDa; C77975; tCstF-64; tauCstF-64
    Orthologs

    Genomic context

    See Cstf2t in Genome Data Viewer
    Location:
    19; 19 C1
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 19 NC_000085.6 (31082841..31086592)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 19 NC_000085.5 (31157331..31161082)

    Chromosome 19 - NC_000085.6Genomic Context describing neighboring genes Neighboring gene protein kinase, cGMP-dependent, type I Neighboring gene ATPase, H+ transporting, lysosomal V1 subunit E1 pseudogene Neighboring gene ubiquitin-like 5 pseudogene Neighboring gene RIKEN cDNA 8430431K14 gene Neighboring gene predicted gene, 41834

    Genomic regions, transcripts, and products

    Bibliography

    GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)

    Pathways from BioSystems

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    RNA binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    RNA binding IDA
    Inferred from Direct Assay
    more info
    PubMed 
    mRNA binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    nucleic acid binding IEA
    Inferred from Electronic Annotation
    more info
     
    Process Evidence Code Pubs
    mRNA 3'-end processing IEA
    Inferred from Electronic Annotation
    more info
     
    mRNA polyadenylation TAS
    Traceable Author Statement
    more info
    PubMed 
    mRNA processing IEA
    Inferred from Electronic Annotation
    more info
     
    pre-mRNA cleavage required for polyadenylation IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    Component Evidence Code Pubs
    mRNA cleavage and polyadenylation specificity factor complex IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    nucleoplasm ISO
    Inferred from Sequence Orthology
    more info
     
    nucleus IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    cleavage stimulation factor subunit 2 tau variant
    Names
    CF-1 64 kDa subunit, tau
    CSTF 64 kDa subunit, tau
    cleavage stimulation factor 64 kDa subunit, tau
    cleavage stimulation factor subunit 2 tau
    cleavage stimulation factor, 3' pre-RNA subunit 2, 64 kDa, tau

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_031249.2NP_112539.2  cleavage stimulation factor subunit 2 tau variant

      See identical proteins and their annotated locations for NP_112539.2

      Status: VALIDATED

      Source sequence(s)
      AK082910, BY637182, CJ182579
      Consensus CDS
      CCDS37958.1
      UniProtKB/Swiss-Prot
      Q8C7E9
      Related
      ENSMUSP00000093831.3, ENSMUST00000066039.6
      Conserved Domains (4) summary
      COG0724
      Location:16109
      RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
      cd12671
      Location:1892
      RRM_CSTF2_CSTF2T; RNA recognition motif in cleavage stimulation factor subunit 2 (CSTF2), cleavage stimulation factor subunit 2 tau variant (CSTF2T) and similar proteins
      pfam14304
      Location:588628
      CSTF_C; Transcription termination and cleavage factor C-terminal
      pfam14327
      Location:113191
      CSTF2_hinge; Hinge domain of cleavage stimulation factor subunit 2

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000085.6 Reference GRCm38.p4 C57BL/6J

      Range
      31082841..31086592
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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