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    DREB1A dehydration response element B1A [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 828652, updated on 7-Sep-2023

    Summary

    Gene symbol
    DREB1A
    Gene description
    dehydration response element B1A
    Primary source
    Araport:AT4G25480
    Locus tag
    AT4G25480
    See related
    TAIR:AT4G25480
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    ATCBF3; C-REPEAT BINDING FACTOR 3; C-REPEAT BINDING FACTOR 3; CBF3; dehydration response element B1A; T30C3.3; TRANSCRIPTIONAL ACTIVATOR CBF3
    Summary
    encodes a member of the DREB subfamily A-1 of ERF/AP2 transcription factor family (CBF3). The protein contains one AP2 domain. There are six members in this subfamily, including CBF1, CBF2, and CBF3. This gene is involved in response to low temperature and abscisic acid.
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    Genomic context

    See DREB1A in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    1
    Sequence:
    Chromosome: 4; NC_003075.7 (13018010..13019400, complement)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene non-intrinsic ABC protein 8 Neighboring gene C-repeat/DRE binding factor 2 Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene miscRNA Neighboring gene C-repeat/DRE binding factor 1

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    NM_118680.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity IDA
    Inferred from Direct Assay
    more info
    PubMed 
    enables DNA-binding transcription factor activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    PubMed 
    enables cis-regulatory region sequence-specific DNA binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    enables transcription cis-regulatory region binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
     

    General protein information

    Preferred Names
    dehydration response element B1A
    NP_567720.1
    • dehydration response element B1A (DREB1A); CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: C-repeat/DRE binding factor 2 (TAIR:AT4G25470.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      13018010..13019400 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_118680.2NP_567720.1  dehydration response element B1A [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_567720.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O65612, O82131, Q1ZZS0, Q2HII7, Q5QE70, Q5Y4C4, Q9M0L0, Q9SAZ3
      UniProtKB/TrEMBL
      A0A178UZ96, A0A384KFV8, A0A5S9XWG1, A0A7G2F0U4, B2BIZ3, B2BIZ9, B2BJ08, B2BJ17, B2BJ19, B2BJ24, D5SH10
      Conserved Domains (1) summary
      cd00018
      Location:49109
      AP2; DNA-binding domain found in transcription regulators in plants such as APETALA2 and EREBP (ethylene responsive element binding protein). In EREBPs the domain specifically binds to the 11bp GCC box of the ethylene response element (ERE), a promotor ...