U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination
    • Showing Current items.

    CNGC19 cyclic nucleotide gated channel 19 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 821036, updated on 7-Sep-2023

    Summary

    Go to the top of the page Help
    Gene symbol
    CNGC19
    Gene description
    cyclic nucleotide gated channel 19
    Primary source
    Araport:AT3G17690
    Locus tag
    AT3G17690
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    ATCNGC19; cyclic nucleotide gated channel 19; CYCLIC NUCLEOTIDE-GATED CHANNEL 19
    Summary
    member of Cyclic nucleotide gated channel family
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    Location:
    chromosome: 3
    Exon count:
    10
    Sequence:
    Chromosome: 3; NC_003074.8 (6045002..6048529)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene Cupredoxin superfamily protein Neighboring gene Kinase interacting (KIP1-like) family protein Neighboring gene cyclic nucleotide-binding transporter 1 Neighboring gene F-box and associated interaction domains-containing protein

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Calcium channel CNGC19 mediates basal defense signaling to regulate colonization by Piriformospora indica in Arabidopsis roots. Jogawat A, et al. J Exp Bot, 2020 May 9. PMID 31957790, Free PMC Article
    2. The Ca(2+) Channel CNGC19 Regulates Arabidopsis Defense Against Spodoptera Herbivory. Meena MK, et al. Plant Cell, 2019 Jul. PMID 31076540, Free PMC Article
    3. Salt-dependent regulation of a CNG channel subfamily in Arabidopsis. Kugler A, et al. BMC Plant Biol, 2009 Nov 27. PMID 19943938, Free PMC Article
    4. Identification of enzymes for adenosine-to-inosine editing and discovery of cytidine-to-uridine editing in nucleus-encoded transfer RNAs of Arabidopsis. Zhou W, et al. Plant Physiol, 2014 Dec. PMID 25315605, Free PMC Article
    5. Identification of ubiquitinated proteins in Arabidopsis. Manzano C, et al. Plant Mol Biol, 2008 Sep. PMID 18535787

    See all (7) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. Calcium channel CNGC19 mediates basal defense signaling to regulate colonization by Piriformospora indica in Arabidopsis roots.
      Title: Calcium channel CNGC19 mediates basal defense signaling to regulate colonization by Piriformospora indica in Arabidopsis roots.
    2. a key mechanistic role for the Ca(2+) channel CNGC19 in the recognition of herbivory and the activation of defense signaling, is reported.
      Title: The Ca(2+) Channel CNGC19 Regulates Arabidopsis Defense Against Spodoptera Herbivory.
    3. Both CNGC19 and CNGC20 respond to salinity with increased gene activity and accumulation of transcripts in the shoot.
      Title: Salt-dependent regulation of a CNG channel subfamily in Arabidopsis.
    Submit: New GeneRIF Correction

    Interactions

    Go to the top of the page Help
    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Go to the top of the page Help

    Homology

    NM_001338305.1
    NM_001338306.1
    NM_112650.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables ligand-gated calcium channel activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables monoatomic ion channel activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within response to herbivore IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  
    located_in plasma membrane IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    cyclic nucleotide gated channel 19
    NP_188396.2
    • cyclic nucleotide gated channel 19 (CNGC19); FUNCTIONS IN: ion channel activity, cyclic nucleotide binding, calmodulin binding; INVOLVED IN: ion transport, transmembrane transport; LOCATED IN: membrane; EXPRESSED IN: hypocotyl, root; CONTAINS InterPro DOMAIN/s: Cyclic nucleotide-binding (InterPro:IPR000595), Ion transport (InterPro:IPR005821), Cyclic nucleotide-binding-like (InterPro:IPR018490), RmlC-like jelly roll fold (InterPro:IPR014710); BEST Arabidopsis thaliana protein match is: cyclic nucleotide-binding transporter 1 (TAIR:AT3G17700.1); Has 2826 Blast hits to 2760 proteins in 210 species: Archae - 0; Bacteria - 14; Metazoa - 1491; Fungi - 0; Plants - 890; Viruses - 0; Other Eukaryotes - 431 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      6045002..6048529
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_112650.4 → NP_188396.2  cyclic nucleotide gated channel 19 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_188396.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9LDR2
      UniProtKB/TrEMBL
      A0A178VI25, A0A5S9XDB4
      Conserved Domains (1) summary
      PLN03192
      Location:216 → 625
      PLN03192; Voltage-dependent potassium channel; Provisional

    2. NM_001338305.1 → NP_001325958.1  cyclic nucleotide gated channel 19 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VI25, A0A1I9LMT9

    3. NM_001338306.1 → NP_001325957.1  cyclic nucleotide gated channel 19 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1I9LMT8
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9LDR2.1

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Tools