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    Zfpl1 zinc finger like protein 1 [ Mus musculus (house mouse) ]

    Gene ID: 81909, updated on 23-Jun-2021

    Summary

    Official Symbol
    Zfpl1provided by MGI
    Official Full Name
    zinc finger like protein 1provided by MGI
    Primary source
    MGI:MGI:1891017
    See related
    Ensembl:ENSMUSG00000024792
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Expression
    Ubiquitous expression in duodenum adult (RPKM 42.5), adrenal adult (RPKM 37.6) and 28 other tissues See more
    Orthologs
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    Genomic context

    See Zfpl1 in Genome Data Viewer
    Location:
    19; 19 A
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    109 current GRCm39 (GCF_000001635.27) 19 NC_000085.7 (6130787..6135005, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 19 NC_000085.6 (6080757..6084975, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 19 NC_000085.5 (6080762..6084891, complement)

    Chromosome 19 - NC_000085.7Genomic Context describing neighboring genes Neighboring gene zinc finger, HIT domain containing 2 Neighboring gene transmembrane 7 superfamily member 2 Neighboring gene VPS51 GARP complex subunit Neighboring gene transmembrane protein 262 Neighboring gene cell division cycle associated 5 Neighboring gene predicted gene 550

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Targeted (2) 

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Clone Names

    • 1500015B20Rik

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
     
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
     
    acts_upstream_of_or_within vesicle-mediated transport IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    is_active_in Golgi apparatus IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    located_in Golgi apparatus ISO
    Inferred from Sequence Orthology
    more info
     
    located_in integral component of membrane IEA
    Inferred from Electronic Annotation
    more info
     
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
     

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001356994.1NP_001343923.1  zinc finger protein-like 1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) differs in the 5' UTR compared to variant 1. Variants 1 and 2 encode the same protein.
      Source sequence(s)
      AC131692, AK005244, BB753345, BU054783, CX202011
      Consensus CDS
      CCDS29492.1
      Related
      ENSMUSP00000125176.2, ENSMUST00000160977.8
      Conserved Domains (1) summary
      cd16487
      Location:50104
      mRING-H2-C3DHC3_ZFPL1; Modified RING finger, H2 subclass (C3DHC3-type), found in zinc finger protein-like 1 (ZFPL1) and similar proteins
    2. NM_024231.3NP_077193.1  zinc finger protein-like 1

      See identical proteins and their annotated locations for NP_077193.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) encodes the shorter transcript. Variants 1 and 2 encode the same protein.
      Source sequence(s)
      AC131692, AK005244, BB753345
      Consensus CDS
      CCDS29492.1
      UniProtKB/Swiss-Prot
      Q9DB43
      Related
      ENSMUSP00000025707.3, ENSMUST00000025707.9
      Conserved Domains (1) summary
      cd16487
      Location:50104
      mRING-H2-C3DHC3_ZFPL1; Modified RING finger, H2 subclass (C3DHC3-type), found in zinc finger protein-like 1 (ZFPL1) and similar proteins

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000085.7 Reference GRCm39 C57BL/6J

      Range
      6130787..6135005 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006531862.3XP_006531925.1  zinc finger protein-like 1 isoform X1

      See identical proteins and their annotated locations for XP_006531925.1

      UniProtKB/Swiss-Prot
      Q9DB43
      Conserved Domains (1) summary
      cd16487
      Location:50104
      mRING-H2-C3DHC3_ZFPL1; Modified RING finger, H2 subclass (C3DHC3-type), found in zinc finger protein-like 1 (ZFPL1) and similar proteins
    2. XM_006531863.4XP_006531926.1  zinc finger protein-like 1 isoform X1

      See identical proteins and their annotated locations for XP_006531926.1

      UniProtKB/Swiss-Prot
      Q9DB43
      Conserved Domains (1) summary
      cd16487
      Location:50104
      mRING-H2-C3DHC3_ZFPL1; Modified RING finger, H2 subclass (C3DHC3-type), found in zinc finger protein-like 1 (ZFPL1) and similar proteins
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