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    Gpank1 G patch domain and ankyrin repeats 1 [ Mus musculus (house mouse) ]

    Gene ID: 81845, updated on 31-Jan-2019

    Summary

    Official Symbol
    Gpank1provided by MGI
    Official Full Name
    G patch domain and ankyrin repeats 1provided by MGI
    Primary source
    MGI:MGI:2148975
    See related
    Ensembl:ENSMUSG00000092417
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    G5; Bat4; Bat-4; D17H6S54E
    Expression
    Ubiquitous expression in testis adult (RPKM 21.0), spleen adult (RPKM 7.3) and 28 other tissues See more
    Orthologs

    Genomic context

    See Gpank1 in Genome Data Viewer
    Location:
    17 B1; 17 18.59 cM
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 17 NC_000083.6 (35121473..35124815)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 17 NC_000083.5 (35258441..35261760)

    Chromosome 17 - NC_000083.6Genomic Context describing neighboring genes Neighboring gene lymphocyte antigen 6 complex, locus G5C Neighboring gene lymphocyte antigen 6 complex, locus G5B Neighboring gene casein kinase 2, beta polypeptide Neighboring gene predicted gene 20522 Neighboring gene DNA segment, Chr 17, human D6S53E Neighboring gene apolipoprotein M

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Targeted (2) 

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    nucleic acid binding IEA
    Inferred from Electronic Annotation
    more info
     
    protein binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    Process Evidence Code Pubs
    biological_process ND
    No biological Data available
    more info
     
    Component Evidence Code Pubs
    cellular_component ND
    No biological Data available
    more info
     

    General protein information

    Preferred Names
    G patch domain and ankyrin repeat-containing protein 1
    Names
    G patch domain and ankyrin repeats-containing protein 1
    HLA-B associated transcript 4
    protein BAT4

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001128597.1NP_001122069.1  G patch domain and ankyrin repeat-containing protein 1 isoform 2

      See identical proteins and their annotated locations for NP_001122069.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) has a distinct 5' UTR and lacks a segment of the 5' coding region, compared to variant 1. The encoded protein (isoform 2) has a shorter N-terminus, compared to isoform 1.
      Source sequence(s)
      BC120639, BY606764, CJ069410
      Consensus CDS
      CCDS50084.1
      UniProtKB/Swiss-Prot
      Q61858
      UniProtKB/TrEMBL
      Q6PES3
      Related
      ENSMUSP00000133240.2, ENSMUST00000165306.2
      Conserved Domains (4) summary
      cd00204
      Location:101205
      ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
      pfam01585
      Location:248292
      G-patch; G-patch domain
      pfam13637
      Location:99154
      Ank_4; Ankyrin repeats (many copies)
      sd00045
      Location:99131
      ANK; ANK repeat [structural motif]
    2. NM_032460.2NP_115849.2  G patch domain and ankyrin repeat-containing protein 1 isoform 1 precursor

      See identical proteins and their annotated locations for NP_115849.2

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) encodes the longer isoform (1).
      Source sequence(s)
      BC120637, BY606764
      Consensus CDS
      CCDS28685.1
      UniProtKB/Swiss-Prot
      Q61858
      Related
      ENSMUSP00000056646.8, ENSMUST00000052167.8
      Conserved Domains (4) summary
      cd00204
      Location:124228
      ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
      pfam01585
      Location:271315
      G-patch; G-patch domain
      pfam13637
      Location:122177
      Ank_4; Ankyrin repeats (many copies)
      sd00045
      Location:122154
      ANK; ANK repeat [structural motif]

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000083.6 Reference GRCm38.p4 C57BL/6J

      Range
      35121473..35124815
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006525183.1XP_006525246.1  G patch domain and ankyrin repeat-containing protein 1 isoform X1

      See identical proteins and their annotated locations for XP_006525246.1

      UniProtKB/TrEMBL
      Q6PES3
      Conserved Domains (4) summary
      cd00204
      Location:101205
      ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
      pfam01585
      Location:248292
      G-patch; G-patch domain
      pfam13637
      Location:99154
      Ank_4; Ankyrin repeats (many copies)
      sd00045
      Location:99131
      ANK; ANK repeat [structural motif]
    2. XM_006525182.2XP_006525245.1  G patch domain and ankyrin repeat-containing protein 1 isoform X1

      See identical proteins and their annotated locations for XP_006525245.1

      UniProtKB/TrEMBL
      Q6PES3
      Conserved Domains (4) summary
      cd00204
      Location:101205
      ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
      pfam01585
      Location:248292
      G-patch; G-patch domain
      pfam13637
      Location:99154
      Ank_4; Ankyrin repeats (many copies)
      sd00045
      Location:99131
      ANK; ANK repeat [structural motif]
    3. XM_006525181.2XP_006525244.1  G patch domain and ankyrin repeat-containing protein 1 isoform X1

      See identical proteins and their annotated locations for XP_006525244.1

      UniProtKB/TrEMBL
      Q6PES3
      Conserved Domains (4) summary
      cd00204
      Location:101205
      ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
      pfam01585
      Location:248292
      G-patch; G-patch domain
      pfam13637
      Location:99154
      Ank_4; Ankyrin repeats (many copies)
      sd00045
      Location:99131
      ANK; ANK repeat [structural motif]
    4. XM_006525184.1XP_006525247.1  G patch domain and ankyrin repeat-containing protein 1 isoform X1

      See identical proteins and their annotated locations for XP_006525247.1

      UniProtKB/TrEMBL
      Q6PES3
      Conserved Domains (4) summary
      cd00204
      Location:101205
      ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
      pfam01585
      Location:248292
      G-patch; G-patch domain
      pfam13637
      Location:99154
      Ank_4; Ankyrin repeats (many copies)
      sd00045
      Location:99131
      ANK; ANK repeat [structural motif]

    Reference GRCm38.p4 129X1/SvJ

    Genomic

    1. NT_039662.3 Reference GRCm38.p4 129X1/SvJ

      Range
      1371194..1374513
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Reference GRCm38.p4 NOD/MrkTac

    Genomic

    1. NT_187027.1 Reference GRCm38.p4 NOD/MrkTac

      Range
      1439678..1442997
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Reference GRCm38.p4 NOD/ShiLtJ

    Genomic

    1. NT_187004.1 Reference GRCm38.p4 NOD/ShiLtJ

      Range
      1439915..1443234
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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