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    TSPAN14 tetraspanin 14 [ Homo sapiens (human) ]

    Gene ID: 81619, updated on 21-May-2024

    Summary

    Official Symbol
    TSPAN14provided by HGNC
    Official Full Name
    tetraspanin 14provided by HGNC
    Primary source
    HGNC:HGNC:23303
    See related
    Ensembl:ENSG00000108219 AllianceGenome:HGNC:23303
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    TM4SF14; DC-TM4F2; tspan-14
    Summary
    Enables enzyme binding activity. Involved in positive regulation of Notch signaling pathway; protein localization to plasma membrane; and protein maturation. Located in plasma membrane. [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Ubiquitous expression in fat (RPKM 22.8), placenta (RPKM 20.4) and 25 other tissues See more
    Orthologs
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    See TSPAN14 in Genome Data Viewer
    Location:
    10q23.1
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 10 NC_000010.11 (80454310..80522631)
    RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 10 NC_060934.1 (81323409..81391729)
    105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 10 NC_000010.10 (82214066..82282387)

    Chromosome 10 - NC_000010.11Genomic Context describing neighboring genes Neighboring gene MPRA-validated peak1026 silencer Neighboring gene ReSE screen-validated silencer GRCh37_chr10:82123032-82123216 Neighboring gene DPY30 domain containing 1 Neighboring gene DPY30 domain containing 2 Neighboring gene ReSE screen-validated silencer GRCh37_chr10:82163430-82163602 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 2545 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:82168661-82169254 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:82170101-82170600 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr10:82177040-82177582 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 3654 Neighboring gene peroxiredoxin like 2A Neighboring gene Sharpr-MPRA regulatory region 12974 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 3655 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:82214375-82214892 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 3657 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 3658 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 3659 Neighboring gene Sharpr-MPRA regulatory region 907 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:82224527-82225098 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:82225099-82225670 Neighboring gene Sharpr-MPRA regulatory region 4556 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 3660 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 3661 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 3662 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 3663 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 2547 Neighboring gene Sharpr-MPRA regulatory region 2609 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:82257110-82258073 Neighboring gene Sharpr-MPRA regulatory region 10623 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 3664 Neighboring gene uncharacterized LOC124902471 Neighboring gene TSPAN14 antisense RNA 1 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 3665 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 2548 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 3666 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 3667 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 3668 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 3669 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 3670 Neighboring gene SH2 domain containing 4B Neighboring gene MPRA-validated peak1027 silencer Neighboring gene uncharacterized LOC105378387

    Genomic regions, transcripts, and products

    Expression

    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    Phenotypes

    EBI GWAS Catalog

    Description
    Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.
    EBI GWAS Catalog

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Clone Names

    • MGC11352

    Gene Ontology Provided by GOA

    Function Evidence Code Pubs
    enables enzyme binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    Process Evidence Code Pubs
    involved_in positive regulation of Notch signaling pathway IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    involved_in protein localization to plasma membrane IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    involved_in protein maturation IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    Component Evidence Code Pubs
    located_in cell surface IEA
    Inferred from Electronic Annotation
    more info
     
    located_in endoplasmic reticulum lumen TAS
    Traceable Author Statement
    more info
     
    is_active_in plasma membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    located_in plasma membrane IDA
    Inferred from Direct Assay
    more info
    PubMed 
    located_in plasma membrane TAS
    Traceable Author Statement
    more info
     
    located_in specific granule membrane TAS
    Traceable Author Statement
    more info
     
    located_in tertiary granule membrane TAS
    Traceable Author Statement
    more info
     
    located_in tetraspanin-enriched microdomain IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    tetraspanin-14
    Names
    tetraspanin similar to TM4SF9
    transmembrane 4 superfamily member 14

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001128309.3NP_001121781.1  tetraspanin-14 isoform 2 precursor

      See identical proteins and their annotated locations for NP_001121781.1

      Status: VALIDATED

      Source sequence(s)
      AC021028, BM991301, BQ923322, DC300676
      Consensus CDS
      CCDS44448.1
      UniProtKB/Swiss-Prot
      Q8NG11
      Related
      ENSP00000418195.1, ENST00000481124.5
      Conserved Domains (1) summary
      cl02781
      Location:23110
      tetraspanin_LEL; Tetraspanin, extracellular domain or large extracellular loop (LEL). Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the ...
    2. NM_001351266.2NP_001338195.1  tetraspanin-14 isoform 1

      Status: VALIDATED

      Source sequence(s)
      AC021028, AL136638, BC002920, BM991301, BQ923322
      Consensus CDS
      CCDS7369.1
      UniProtKB/Swiss-Prot
      A6NHE1, B4DHY6, D3DWD7, D3DWD8, Q567U7, Q8NG11, Q9BU34, Q9H0U1
      Related
      ENSP00000519706.1, ENST00000714437.1
      Conserved Domains (1) summary
      cd03159
      Location:113233
      TM4SF9_like_LEL; Tetraspanin, extracellular domain or large extracellular loop (LEL), TM4SF9_like subfamily. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment ...
    3. NM_001351267.4NP_001338196.1  tetraspanin-14 isoform 1

      Status: VALIDATED

      Source sequence(s)
      AC021028
      Consensus CDS
      CCDS7369.1
      UniProtKB/Swiss-Prot
      A6NHE1, B4DHY6, D3DWD7, D3DWD8, Q567U7, Q8NG11, Q9BU34, Q9H0U1
      Related
      ENSP00000361231.1, ENST00000372158.6
      Conserved Domains (1) summary
      cd03159
      Location:113233
      TM4SF9_like_LEL; Tetraspanin, extracellular domain or large extracellular loop (LEL), TM4SF9_like subfamily. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment ...
    4. NM_001351268.2NP_001338197.1  tetraspanin-14 isoform 1

      Status: VALIDATED

      Source sequence(s)
      AC021028, AL136638, AL519790, BC002920, BM991301, BQ923322
      Consensus CDS
      CCDS7369.1
      UniProtKB/Swiss-Prot
      A6NHE1, B4DHY6, D3DWD7, D3DWD8, Q567U7, Q8NG11, Q9BU34, Q9H0U1
      Conserved Domains (1) summary
      cd03159
      Location:113233
      TM4SF9_like_LEL; Tetraspanin, extracellular domain or large extracellular loop (LEL), TM4SF9_like subfamily. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment ...
    5. NM_001351269.2NP_001338198.1  tetraspanin-14 isoform 1

      Status: VALIDATED

      Source sequence(s)
      AC021028, BC002920, BM991301, DN998010
      Consensus CDS
      CCDS7369.1
      UniProtKB/Swiss-Prot
      A6NHE1, B4DHY6, D3DWD7, D3DWD8, Q567U7, Q8NG11, Q9BU34, Q9H0U1
      Conserved Domains (1) summary
      cd03159
      Location:113233
      TM4SF9_like_LEL; Tetraspanin, extracellular domain or large extracellular loop (LEL), TM4SF9_like subfamily. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment ...
    6. NM_001351270.2NP_001338199.1  tetraspanin-14 isoform 1

      Status: VALIDATED

      Source sequence(s)
      AC021028, AL136638, BC002920, BM991301, BQ923322
      Consensus CDS
      CCDS7369.1
      UniProtKB/Swiss-Prot
      A6NHE1, B4DHY6, D3DWD7, D3DWD8, Q567U7, Q8NG11, Q9BU34, Q9H0U1
      Related
      ENSP00000519712.1, ENST00000714443.1
      Conserved Domains (1) summary
      cd03159
      Location:113233
      TM4SF9_like_LEL; Tetraspanin, extracellular domain or large extracellular loop (LEL), TM4SF9_like subfamily. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment ...
    7. NM_001351271.2NP_001338200.1  tetraspanin-14 isoform 1

      Status: VALIDATED

      Source sequence(s)
      AC021028, AL136638, BC002920, BM991301, BQ923322
      Consensus CDS
      CCDS7369.1
      UniProtKB/Swiss-Prot
      A6NHE1, B4DHY6, D3DWD7, D3DWD8, Q567U7, Q8NG11, Q9BU34, Q9H0U1
      Related
      ENSP00000519713.1, ENST00000714444.1
      Conserved Domains (1) summary
      cd03159
      Location:113233
      TM4SF9_like_LEL; Tetraspanin, extracellular domain or large extracellular loop (LEL), TM4SF9_like subfamily. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment ...
    8. NM_001351272.2NP_001338201.1  tetraspanin-14 isoform 1

      Status: VALIDATED

      Source sequence(s)
      AC021028, AL136638, BC002920, BM991301, BQ923322
      Consensus CDS
      CCDS7369.1
      UniProtKB/Swiss-Prot
      A6NHE1, B4DHY6, D3DWD7, D3DWD8, Q567U7, Q8NG11, Q9BU34, Q9H0U1
      Related
      ENSP00000519714.1, ENST00000714445.1
      Conserved Domains (1) summary
      cd03159
      Location:113233
      TM4SF9_like_LEL; Tetraspanin, extracellular domain or large extracellular loop (LEL), TM4SF9_like subfamily. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment ...
    9. NM_030927.4NP_112189.2  tetraspanin-14 isoform 1

      See identical proteins and their annotated locations for NP_112189.2

      Status: VALIDATED

      Source sequence(s)
      AC021028, AL136638, BC002920, BM991301, BQ923322
      Consensus CDS
      CCDS7369.1
      UniProtKB/Swiss-Prot
      A6NHE1, B4DHY6, D3DWD7, D3DWD8, Q567U7, Q8NG11, Q9BU34, Q9H0U1
      Related
      ENSP00000396270.2, ENST00000429989.8
      Conserved Domains (1) summary
      cd03159
      Location:113233
      TM4SF9_like_LEL; Tetraspanin, extracellular domain or large extracellular loop (LEL), TM4SF9_like subfamily. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment ...

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000010.11 Reference GRCh38.p14 Primary Assembly

      Range
      80454310..80522631
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060934.1 Alternate T2T-CHM13v2.0

      Range
      81323409..81391729
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NR_120662.1: Suppressed sequence

      Description
      NR_120662.1: This RefSeq was removed because the gene was discontinued.