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    Rad54l2 RAD54 like 2 (S. cerevisiae) [ Mus musculus (house mouse) ]

    Gene ID: 81000, updated on 22-Aug-2021

    Summary

    Official Symbol
    Rad54l2provided by MGI
    Official Full Name
    RAD54 like 2 (S. cerevisiae)provided by MGI
    Primary source
    MGI:MGI:1933196
    See related
    Ensembl:ENSMUSG00000040661
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    A; Sr; Arip4; Srisnf2l; D130058C05; G630026H09Rik
    Expression
    Ubiquitous expression in CNS E11.5 (RPKM 6.2), CNS E14 (RPKM 4.4) and 28 other tissues See more
    Orthologs
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    Genomic context

    See Rad54l2 in Genome Data Viewer
    Location:
    9; 9 F1
    Exon count:
    22
    Annotation release Status Assembly Chr Location
    109 current GRCm39 (GCF_000001635.27) 9 NC_000075.7 (106565279..106666412, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 9 NC_000075.6 (106688080..106789213, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 9 NC_000075.5 (106590411..106691544, complement)

    Chromosome 9 - NC_000075.7Genomic Context describing neighboring genes Neighboring gene glutamate receptor, metabotropic 2 Neighboring gene testis expressed gene 264 Neighboring gene DDB1 and CUL4 associated factor 1 Neighboring gene RNA binding motif protein 15B Neighboring gene mesencephalic astrocyte-derived neurotrophic factor

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Gene trapped (2)  1 citation
    • Endonuclease-mediated (1) 

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables ATP binding IDA
    Inferred from Direct Assay
    more info
    PubMed 
    enables ATP hydrolysis activity IDA
    Inferred from Direct Assay
    more info
    PubMed 
    enables ATP-dependent chromatin remodeler activity IEA
    Inferred from Electronic Annotation
    more info
     
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
     
    enables DNA helicase activity IEA
    Inferred from Electronic Annotation
    more info
     
    enables helicase activity IEA
    Inferred from Electronic Annotation
    more info
     
    enables hydrolase activity IEA
    Inferred from Electronic Annotation
    more info
     
    enables nucleotide binding IEA
    Inferred from Electronic Annotation
    more info
     
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    enables protein kinase binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    enables transcription coregulator activity IDA
    Inferred from Direct Assay
    more info
    PubMed 
    Component Evidence Code Pubs
    located_in nuclear speck IDA
    Inferred from Direct Assay
    more info
    PubMed 
    is_active_in nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    located_in nucleus IDA
    Inferred from Direct Assay
    more info
    PubMed 

    General protein information

    Preferred Names
    helicase ARIP4
    Names
    HCMV-interacting protein
    RAD54-like protein 2
    androgen receptor-interacting protein 4
    steroid receptor-interacting SNF2 domain protein
    NP_109655.2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_030730.2NP_109655.2  helicase ARIP4

      Status: VALIDATED

      Source sequence(s)
      AC125188, AK143506, BF455201, CJ123928
      Consensus CDS
      CCDS40759.1
      UniProtKB/Swiss-Prot
      Q99NG0
      UniProtKB/TrEMBL
      E9QKL0
      Related
      ENSMUSP00000045454.6, ENSMUST00000046502.7
      Conserved Domains (4) summary
      cd00046
      Location:300492
      DEXDc; DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
      pfam00176
      Location:274628
      SNF2_N; SNF2 family N-terminal domain
      pfam00271
      Location:720854
      Helicase_C; Helicase conserved C-terminal domain
      pfam15662
      Location:11231234
      SPATA3; Spermatogenesis-associated protein 3 family

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000075.7 Reference GRCm39 C57BL/6J

      Range
      106565279..106666412 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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