U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination
    • Showing Current items.

    Arl4d ADP-ribosylation factor-like 4D [ Mus musculus (house mouse) ]

    Gene ID: 80981, updated on 20-Dec-2022

    Summary

    Official Symbol
    Arl4dprovided by MGI
    Official Full Name
    ADP-ribosylation factor-like 4Dprovided by MGI
    Primary source
    MGI:MGI:1933155
    See related
    Ensembl:ENSMUSG00000034936 AllianceGenome:MGI:1933155
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    ARL6; Arl5; Arf4l; Arfl4; 1110036H21Rik
    Summary
    Predicted to enable GTP binding activity. Predicted to be involved in intracellular protein transport and vesicle-mediated transport. Located in nucleus. Is expressed in several structures, including dorsal root ganglion; genitourinary system; liver; lung; and telencephalon mantle layer. Orthologous to human ARL4D (ADP ribosylation factor like GTPase 4D). [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Ubiquitous expression in lung adult (RPKM 30.0), bladder adult (RPKM 18.5) and 25 other tissues See more
    Orthologs
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    See Arl4d in Genome Data Viewer
    Location:
    11; 11 D
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    109 current GRCm39 (GCF_000001635.27) 11 NC_000077.7 (101556367..101558658)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 11 NC_000077.6 (101665541..101667832)

    Chromosome 11 - NC_000077.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 23971 Neighboring gene U2 small nuclear RNA 10 Neighboring gene predicted gene, 39391 Neighboring gene DEAH (Asp-Glu-Ala-His) box polypeptide 8

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Clone Names

    • MGC28743

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables GTP binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    enables GTPase activity IEA
    Inferred from Electronic Annotation
    more info
     
    enables nucleotide binding IEA
    Inferred from Electronic Annotation
    more info
     
    Process Evidence Code Pubs
    involved_in intracellular protein transport IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    involved_in vesicle-mediated transport IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    Component Evidence Code Pubs
    is_active_in cytoplasm IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    located_in cytoplasm ISO
    Inferred from Sequence Orthology
    more info
     
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
     
    located_in nucleus IDA
    Inferred from Direct Assay
    more info
    PubMed 
    located_in plasma membrane ISO
    Inferred from Sequence Orthology
    more info
     

    General protein information

    Preferred Names
    ADP-ribosylation factor-like protein 4D
    Names
    ADP-ribosylation factor-like 5
    ADP-ribosylation factor-like protein 4L
    ADP-ribosylation factor-like protein 5

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_025404.3NP_079680.1  ADP-ribosylation factor-like protein 4D

      See identical proteins and their annotated locations for NP_079680.1

      Status: VALIDATED

      Source sequence(s)
      BC016113, BQ830332
      Consensus CDS
      CCDS36336.1
      UniProtKB/Swiss-Prot
      Q99PE9, Q9CQB1
      UniProtKB/TrEMBL
      A0A8C6IB01
      Related
      ENSMUSP00000035918.3, ENSMUST00000039388.3
      Conserved Domains (1) summary
      cd04152
      Location:19201
      Arl4_Arl7; Arf-like 4 (Arl4) and 7 (Arl7) GTPases

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000077.7 Reference GRCm39 C57BL/6J

      Range
      101556367..101558658
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)