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    Cttnbp2nl CTTNBP2 N-terminal like [ Mus musculus (house mouse) ]

    Gene ID: 80281, updated on 23-Jun-2021

    Summary

    Official Symbol
    Cttnbp2nlprovided by MGI
    Official Full Name
    CTTNBP2 N-terminal likeprovided by MGI
    Primary source
    MGI:MGI:1933137
    See related
    Ensembl:ENSMUSG00000062127
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    AA552995; AA589392; AU018624; BC003236; mKIAA1433
    Expression
    Ubiquitous expression in lung adult (RPKM 8.8), CNS E11.5 (RPKM 6.0) and 27 other tissues See more
    Orthologs
    NEW
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    Try the new Transcript table

    Genomic context

    See Cttnbp2nl in Genome Data Viewer
    Location:
    3; 3 F2.2
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    109 current GRCm39 (GCF_000001635.27) 3 NC_000069.7 (104909231..104960462, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 3 NC_000069.6 (105001915..105053146, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 3 NC_000069.5 (104804833..104856064, complement)

    Chromosome 3 - NC_000069.7Genomic Context describing neighboring genes Neighboring gene wingless-type MMTV integration site family, member 2B Neighboring gene predicted gene, 46819 Neighboring gene uncharacterized LOC118568635 Neighboring gene predicted gene, 40116 Neighboring gene RIKEN cDNA 4930564D02 gene Neighboring gene predicted gene, 40118

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (1) 

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Clone Names

    • MGC7720

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables protein phosphatase 2A binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    enables protein phosphatase 2A binding ISO
    Inferred from Sequence Orthology
    more info
     
    Component Evidence Code Pubs
    is_active_in actin cytoskeleton IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    located_in actin cytoskeleton ISO
    Inferred from Sequence Orthology
    more info
     
    located_in cell projection IEA
    Inferred from Electronic Annotation
    more info
     
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
     
    located_in cytoskeleton IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    CTTNBP2 N-terminal-like protein

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001163332.1NP_001156804.1  CTTNBP2 N-terminal-like protein

      See identical proteins and their annotated locations for NP_001156804.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) differs in the 5' UTR compared to variant 1. All three variants encode the same protein.
      Source sequence(s)
      AC166156, AK029901, BY195820
      Consensus CDS
      CCDS17707.1
      UniProtKB/Swiss-Prot
      Q99LJ0
      Related
      ENSMUSP00000096359.3, ENSMUST00000098763.7
      Conserved Domains (3) summary
      PHA03247
      Location:482638
      PHA03247; large tegument protein UL36; Provisional
      TIGR02168
      Location:100292
      SMC_prok_B; chromosome segregation protein SMC, common bacterial type
      pfam09727
      Location:5188
      CortBP2; Cortactin-binding protein-2
    2. NM_001163333.1NP_001156805.1  CTTNBP2 N-terminal-like protein

      See identical proteins and their annotated locations for NP_001156805.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (3) differs in the 5' UTR compared to variant 1. All three variants encode the same protein.
      Source sequence(s)
      AC166156, AK029901, CV562515
      Consensus CDS
      CCDS17707.1
      UniProtKB/Swiss-Prot
      Q99LJ0
      Conserved Domains (3) summary
      PHA03247
      Location:482638
      PHA03247; large tegument protein UL36; Provisional
      TIGR02168
      Location:100292
      SMC_prok_B; chromosome segregation protein SMC, common bacterial type
      pfam09727
      Location:5188
      CortBP2; Cortactin-binding protein-2
    3. NM_030249.4NP_084525.1  CTTNBP2 N-terminal-like protein

      See identical proteins and their annotated locations for NP_084525.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) represents the longest transcript. All three variants encode the same protein.
      Source sequence(s)
      AC166156, AK029901
      Consensus CDS
      CCDS17707.1
      UniProtKB/Swiss-Prot
      Q99LJ0
      Related
      ENSMUSP00000076751.6, ENSMUST00000077548.12
      Conserved Domains (3) summary
      PHA03247
      Location:482638
      PHA03247; large tegument protein UL36; Provisional
      TIGR02168
      Location:100292
      SMC_prok_B; chromosome segregation protein SMC, common bacterial type
      pfam09727
      Location:5188
      CortBP2; Cortactin-binding protein-2

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000069.7 Reference GRCm39 C57BL/6J

      Range
      104909231..104960462 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_030252916.2XP_030108776.1  CTTNBP2 N-terminal-like protein isoform X1

      Conserved Domains (3) summary
      PHA03247
      Location:482638
      PHA03247; large tegument protein UL36; Provisional
      TIGR02168
      Location:100292
      SMC_prok_B; chromosome segregation protein SMC, common bacterial type
      pfam09727
      Location:5188
      CortBP2; Cortactin-binding protein-2
    2. XM_011240288.4XP_011238590.1  CTTNBP2 N-terminal-like protein isoform X1

      See identical proteins and their annotated locations for XP_011238590.1

      UniProtKB/Swiss-Prot
      Q99LJ0
      Conserved Domains (3) summary
      PHA03247
      Location:482638
      PHA03247; large tegument protein UL36; Provisional
      TIGR02168
      Location:100292
      SMC_prok_B; chromosome segregation protein SMC, common bacterial type
      pfam09727
      Location:5188
      CortBP2; Cortactin-binding protein-2
    3. XM_036163418.1XP_036019311.1  CTTNBP2 N-terminal-like protein isoform X1

      Conserved Domains (3) summary
      PHA03247
      Location:482638
      PHA03247; large tegument protein UL36; Provisional
      TIGR02168
      Location:100292
      SMC_prok_B; chromosome segregation protein SMC, common bacterial type
      pfam09727
      Location:5188
      CortBP2; Cortactin-binding protein-2
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