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    RPF1 ribosome production factor 1 homolog [ Homo sapiens (human) ]

    Gene ID: 80135, updated on 17-Jun-2019

    Summary

    Official Symbol
    RPF1provided by HGNC
    Official Full Name
    ribosome production factor 1 homologprovided by HGNC
    Primary source
    HGNC:HGNC:30350
    See related
    Ensembl:ENSG00000117133
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    BXDC5
    Expression
    Ubiquitous expression in bone marrow (RPKM 14.6), thyroid (RPKM 13.5) and 25 other tissues See more
    Orthologs

    Genomic context

    See RPF1 in Genome Data Viewer
    Location:
    1p22.3
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    109.20190607 current GRCh38.p13 (GCF_000001405.39) 1 NC_000001.11 (84479266..84498352)
    105 previous assembly GRCh37.p13 (GCF_000001405.25) 1 NC_000001.10 (84944920..84964033)

    Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene urate oxidase (pseudogene) Neighboring gene deoxyribonuclease 2 beta Neighboring gene G protein subunit gamma 5 Neighboring gene spermatogenesis associated 1 Neighboring gene chitobiase Neighboring gene uncharacterized LOC105378819

    Genomic regions, transcripts, and products

    Expression

    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Clone Names

    • FLJ12475, DKFZp761G0415, DKFZp761M0215

    Gene Ontology Provided by GOA

    Function Evidence Code Pubs
    RNA binding HDA PubMed 
    RNA binding IDA
    Inferred from Direct Assay
    more info
    PubMed 
    protein binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    rRNA binding IEA
    Inferred from Electronic Annotation
    more info
     
    Process Evidence Code Pubs
    rRNA processing IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    Component Evidence Code Pubs
    nucleolus IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    nucleolus IDA
    Inferred from Direct Assay
    more info
    PubMed 
    preribosome, large subunit precursor IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 

    General protein information

    Preferred Names
    ribosome production factor 1
    Names
    2310066N05Rik
    RNA processing factor 1 (RPF1)
    brix domain containing 5
    brix domain-containing protein 5
    ribosome biogenesis protein RPF1

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_025065.7NP_079341.2  ribosome production factor 1

      See identical proteins and their annotated locations for NP_079341.2

      Status: VALIDATED

      Source sequence(s)
      AF322053, AL359584, AL359762, AL844170
      Consensus CDS
      CCDS695.1
      UniProtKB/Swiss-Prot
      Q9H9Y2
      Related
      ENSP00000359688.5, ENST00000370654.6
      Conserved Domains (1) summary
      smart00879
      Location:145314
      Brix; The Brix domain is found in a number of eukaryotic proteins

    RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 109 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p13 Primary Assembly

    Genomic

    1. NC_000001.11 Reference GRCh38.p13 Primary Assembly

      Range
      84479266..84498352
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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