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    prdm16 PR domain containing 16 [ Danio rerio (zebrafish) ]

    Gene ID: 796720, updated on 8-Jun-2019

    Summary

    Official Symbol
    prdm16provided by ZNC
    Official Full Name
    PR domain containing 16provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-080613-2
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Cyprinidae; Danio
    Also known as
    fc09g08; wu:fc09g08; si:ch211-263k4.2
    Orthologs

    Genomic context

    See prdm16 in Genome Data Viewer
    Location:
    chromosome: 8
    Exon count:
    18
    Annotation release Status Assembly Chr Location
    106 current GRCz11 (GCF_000002035.6) 8 NC_007119.7 (48095881..48543438)
    105 previous assembly GRCz10 (GCF_000002035.5) 8 NC_007119.6 (48106925..48554510)
    103 previous assembly Zv9 (GCF_000002035.4) 8 NC_007119.5 (50254487..50491381)

    Chromosome 8 - NC_007119.7Genomic Context describing neighboring genes Neighboring gene procollagen-lysine, 2-oxoglutarate 5-dioxygenase 1a Neighboring gene mitofusin 2 Neighboring gene uncharacterized LOC108190986 Neighboring gene uncharacterized LOC110440023 Neighboring gene uncharacterized LOC101886174 Neighboring gene uncharacterized LOC110440024 Neighboring gene natriuretic peptide A-like

    Genomic regions, transcripts, and products

    General gene information

    Markers

    Homology

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    metal ion binding IEA
    Inferred from Electronic Annotation
    more info
     
    nucleic acid binding IEA
    Inferred from Electronic Annotation
    more info
     
    Process Evidence Code Pubs
    cardiac conduction IGI
    Inferred from Genetic Interaction
    more info
    PubMed 
    cardiac muscle cell proliferation IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    embryonic cranial skeleton morphogenesis IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    embryonic neurocranium morphogenesis IGI
    Inferred from Genetic Interaction
    more info
    PubMed 
    embryonic viscerocranium morphogenesis IGI
    Inferred from Genetic Interaction
    more info
    PubMed 
    heart contraction IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    hematopoietic progenitor cell differentiation IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    hematopoietic stem cell differentiation IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 

    General protein information

    Preferred Names
    PR domain zinc finger protein 16

    NCBI Reference Sequences (RefSeq)

    RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007119.7 Reference GRCz11 Primary Assembly

      Range
      48095881..48543438
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_021478491.1XP_021334166.1  PR domain zinc finger protein 16 isoform X1

      Conserved Domains (6) summary
      smart00317
      Location:85210
      SET; SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain
      COG5048
      Location:9981174
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:10201040
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam00096
      Location:10181040
      zf-C2H2; Zinc finger, C2H2 type
      pfam13465
      Location:10321056
      zf-H2C2_2; Zinc-finger double domain
      pfam13909
      Location:10461071
      zf-H2C2_5; C2H2-type zinc-finger domain
    2. XM_021478494.1XP_021334169.1  PR domain zinc finger protein 16 isoform X7

      Conserved Domains (6) summary
      smart00317
      Location:85210
      SET; SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain
      COG5048
      Location:9981174
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:10201040
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam00096
      Location:10181040
      zf-C2H2; Zinc finger, C2H2 type
      pfam13465
      Location:10321056
      zf-H2C2_2; Zinc-finger double domain
      pfam13909
      Location:10461071
      zf-H2C2_5; C2H2-type zinc-finger domain
    3. XM_021478492.1XP_021334167.1  PR domain zinc finger protein 16 isoform X2

      Conserved Domains (6) summary
      smart00317
      Location:85210
      SET; SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain
      COG5048
      Location:9971173
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:10191039
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam00096
      Location:10171039
      zf-C2H2; Zinc finger, C2H2 type
      pfam13465
      Location:10311055
      zf-H2C2_2; Zinc-finger double domain
      pfam13909
      Location:10451070
      zf-H2C2_5; C2H2-type zinc-finger domain
    4. XM_005167301.4XP_005167358.2  PR domain zinc finger protein 16 isoform X4

    5. XM_005167304.4XP_005167361.2  PR domain zinc finger protein 16 isoform X5

    6. XM_021478493.1XP_021334168.1  PR domain zinc finger protein 16 isoform X3

      Conserved Domains (7) summary
      smart00317
      Location:85210
      SET; SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain
      COG5048
      Location:9941170
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:10161036
      ZF_C2H2; C2H2 Zn finger [structural motif]
      sd00019
      Location:459477
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam00096
      Location:10141036
      zf-C2H2; Zinc finger, C2H2 type
      pfam13465
      Location:10281052
      zf-H2C2_2; Zinc-finger double domain
      pfam13909
      Location:10421067
      zf-H2C2_5; C2H2-type zinc-finger domain
    7. XM_001922892.7XP_001922927.6  PR domain zinc finger protein 16 isoform X6

      UniProtKB/TrEMBL
      F1Q833
    8. XM_009304276.3XP_009302551.2  PR domain zinc finger protein 16 isoform X9

    9. XM_021478495.1XP_021334170.1  PR domain zinc finger protein 16 isoform X8

      Conserved Domains (5) summary
      COG5048
      Location:8421018
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:864884
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam00096
      Location:862884
      zf-C2H2; Zinc finger, C2H2 type
      pfam13465
      Location:876900
      zf-H2C2_2; Zinc-finger double domain
      pfam13909
      Location:890915
      zf-H2C2_5; C2H2-type zinc-finger domain
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