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    Cptp ceramide-1-phosphate transfer protein [ Mus musculus (house mouse) ]

    Gene ID: 79554, updated on 31-Jan-2019

    Summary

    Official Symbol
    Cptpprovided by MGI
    Official Full Name
    ceramide-1-phosphate transfer proteinprovided by MGI
    Primary source
    MGI:MGI:1933107
    See related
    Ensembl:ENSMUSG00000029073
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Gltpd1
    Expression
    Broad expression in testis adult (RPKM 70.7), large intestine adult (RPKM 15.5) and 24 other tissues See more
    Orthologs

    Genomic context

    See Cptp in Genome Data Viewer
    Location:
    4 E2; 4 87.66 cM
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 4 NC_000070.6 (155864723..155869440, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 4 NC_000070.5 (155238832..155243549, complement)

    Chromosome 4 - NC_000070.6Genomic Context describing neighboring genes Neighboring gene matrix-remodelling associated 8 Neighboring gene dishevelled segment polarity protein 1 Neighboring gene taste receptor, type 1, member 3 Neighboring gene integrator complex subunit 11 Neighboring gene pseudouridylate synthase-like 1 Neighboring gene ArfGAP with coiled-coil, ankyrin repeat and PH domains 3

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Pathways from BioSystems

    General gene information

    Markers

    Homology

    Clone Names

    • MGC7473

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    ceramide 1-phosphate binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    ceramide 1-phosphate binding ISO
    Inferred from Sequence Orthology
    more info
     
    ceramide 1-phosphate transporter activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    ceramide 1-phosphate transporter activity ISO
    Inferred from Sequence Orthology
    more info
     
    intermembrane lipid transfer activity IEA
    Inferred from Electronic Annotation
    more info
     
    lipid binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    phospholipid binding ISO
    Inferred from Sequence Orthology
    more info
     
    phospholipid transporter activity ISO
    Inferred from Sequence Orthology
    more info
     
    Process Evidence Code Pubs
    ceramide 1-phosphate transport ISO
    Inferred from Sequence Orthology
    more info
     
    ceramide transport IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    intermembrane lipid transfer IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    lipid transport IEA
    Inferred from Electronic Annotation
    more info
     
    negative regulation of NLRP3 inflammasome complex assembly ISO
    Inferred from Sequence Orthology
    more info
     
    negative regulation of autophagy ISO
    Inferred from Sequence Orthology
    more info
     
    negative regulation of interleukin-1 beta secretion IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    negative regulation of interleukin-1 beta secretion ISO
    Inferred from Sequence Orthology
    more info
     
    Component Evidence Code Pubs
    Golgi apparatus IEA
    Inferred from Electronic Annotation
    more info
     
    cytoplasm IEA
    Inferred from Electronic Annotation
    more info
     
    cytosol IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    cytosol ISO
    Inferred from Sequence Orthology
    more info
     
    endosome IEA
    Inferred from Electronic Annotation
    more info
     
    membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    nucleus IEA
    Inferred from Electronic Annotation
    more info
     
    plasma membrane IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    ceramide-1-phosphate transfer protein
    Names
    glycolipid transfer protein domain containing 1
    glycolipid transfer protein domain-containing protein 1

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_024472.4NP_077792.2  ceramide-1-phosphate transfer protein

      See identical proteins and their annotated locations for NP_077792.2

      Status: PROVISIONAL

      Source sequence(s)
      AL670236
      Consensus CDS
      CCDS19047.1
      UniProtKB/Swiss-Prot
      Q8BS40
      Related
      ENSMUSP00000030950.1, ENSMUST00000030950.7
      Conserved Domains (1) summary
      pfam08718
      Location:30178
      GLTP; Glycolipid transfer protein (GLTP)

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000070.6 Reference GRCm38.p4 C57BL/6J

      Range
      155864723..155869440 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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