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    Avl9 AVL9 cell migration associated [ Mus musculus (house mouse) ]

    Gene ID: 78937, updated on 31-Jan-2019

    Summary

    Official Symbol
    Avl9provided by MGI
    Official Full Name
    AVL9 cell migration associatedprovided by MGI
    Primary source
    MGI:MGI:1926187
    See related
    Ensembl:ENSMUSG00000029787
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    mKIAA0241; 5830411G16Rik; D730049P16Rik
    Expression
    Ubiquitous expression in whole brain E14.5 (RPKM 9.7), CNS E14 (RPKM 8.9) and 28 other tissues See more
    Orthologs

    Genomic context

    See Avl9 in Genome Data Viewer
    Location:
    6; 6 B3
    Exon count:
    16
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 6 NC_000072.6 (56714905..56761912)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 6 NC_000072.5 (56664899..56711905)

    Chromosome 6 - NC_000072.6Genomic Context describing neighboring genes Neighboring gene phosphodiesterase 1C Neighboring gene LSM5 homolog, U6 small nuclear RNA and mRNA degradation associated Neighboring gene kelch repeat and BTB (POZ) domain containing 2 Neighboring gene FK506 binding protein 9

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    molecular_function ND
    No biological Data available
    more info
     
    Process Evidence Code Pubs
    cell migration ISO
    Inferred from Sequence Orthology
    more info
     
    Component Evidence Code Pubs
    endosome IEA
    Inferred from Electronic Annotation
    more info
     
    integral component of membrane IEA
    Inferred from Electronic Annotation
    more info
     
    membrane IEA
    Inferred from Electronic Annotation
    more info
     
    recycling endosome ISO
    Inferred from Sequence Orthology
    more info
     

    General protein information

    Preferred Names
    late secretory pathway protein AVL9 homolog
    Names
    AVL9 homolog (S. cerevisiase)

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_030235.1NP_084511.1  late secretory pathway protein AVL9 homolog

      See identical proteins and their annotated locations for NP_084511.1

      Status: VALIDATED

      Source sequence(s)
      AK122228, CJ109208
      Consensus CDS
      CCDS51789.1
      UniProtKB/Swiss-Prot
      Q80U56
      Related
      ENSMUSP00000031805.8, ENSMUST00000031805.10
      Conserved Domains (4) summary
      pfam07792
      Location:1676
      Afi1; Docking domain of Afi1 for Arf3 in vesicle trafficking
      pfam08616
      Location:382459
      SPA; Stabilization of polarity axis
      pfam09794
      Location:16521
      Avl9; Transport protein Avl9
      cl11519
      Location:116226
      DENN; DENN (AEX-3) domain

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000072.6 Reference GRCm38.p4 C57BL/6J

      Range
      56714905..56761912
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006506790.2XP_006506853.1  late secretory pathway protein AVL9 homolog isoform X1

      Conserved Domains (1) summary
      pfam08616
      Location:164241
      SPA; Stabilization of polarity axis
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