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    Igsf3 immunoglobulin superfamily, member 3 [ Mus musculus (house mouse) ]

    Gene ID: 78908, updated on 23-Jun-2021

    Summary

    Official Symbol
    Igsf3provided by MGI
    Official Full Name
    immunoglobulin superfamily, member 3provided by MGI
    Primary source
    MGI:MGI:1926158
    See related
    Ensembl:ENSMUSG00000042035
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    mKIAA0466; 1700016K10Rik; 2810035F16Rik; 4833439O17Rik
    Expression
    Ubiquitous expression in ovary adult (RPKM 8.2), limb E14.5 (RPKM 8.0) and 26 other tissues See more
    Orthologs
    NEW
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    Try the new Transcript table

    Genomic context

    See Igsf3 in Genome Data Viewer
    Location:
    3 F2.2; 3 44.3 cM
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    109 current GRCm39 (GCF_000001635.27) 3 NC_000069.7 (101284301..101370376)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 3 NC_000069.6 (101376672..101463060)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 3 NC_000069.5 (101181048..101266983)

    Chromosome 3 - NC_000069.7Genomic Context describing neighboring genes Neighboring gene RAN guanine nucleotide release factor pseudogene Neighboring gene predicted gene, 32900 Neighboring gene VISTA enhancer mm1505 Neighboring gene predicted gene, 40109 Neighboring gene predicted gene, 33162

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Gene trapped (1) 
    • Endonuclease-mediated (1) 

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
     
    Process Evidence Code Pubs
    involved_in lacrimal gland development ISO
    Inferred from Sequence Orthology
    more info
     
    Component Evidence Code Pubs
    is_active_in integral component of membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    immunoglobulin superfamily member 3

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_207205.2NP_997088.2  immunoglobulin superfamily member 3 precursor

      See identical proteins and their annotated locations for NP_997088.2

      Status: VALIDATED

      Source sequence(s)
      AC131184
      Consensus CDS
      CCDS17682.1
      UniProtKB/Swiss-Prot
      Q6ZQA6
      Related
      ENSMUSP00000048900.6, ENSMUST00000043983.11
      Conserved Domains (3) summary
      smart00410
      Location:293389
      IG_like; Immunoglobulin like
      pfam07686
      Location:687784
      V-set; Immunoglobulin V-set domain
      cl11960
      Location:162256
      Ig; Immunoglobulin domain

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000069.7 Reference GRCm39 C57BL/6J

      Range
      101284301..101370376
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006502342.5XP_006502405.1  immunoglobulin superfamily member 3 isoform X1

      See identical proteins and their annotated locations for XP_006502405.1

      UniProtKB/TrEMBL
      A0A0A6YX40
      Related
      ENSMUSP00000141823.2, ENSMUST00000195164.2
      Conserved Domains (3) summary
      smart00409
      Location:293389
      IG; Immunoglobulin
      pfam07686
      Location:707804
      V-set; Immunoglobulin V-set domain
      cl11960
      Location:162256
      Ig; Immunoglobulin domain
    2. XM_006502343.5XP_006502406.1  immunoglobulin superfamily member 3 isoform X1

      See identical proteins and their annotated locations for XP_006502406.1

      UniProtKB/TrEMBL
      A0A0A6YX40
      Conserved Domains (3) summary
      smart00409
      Location:293389
      IG; Immunoglobulin
      pfam07686
      Location:707804
      V-set; Immunoglobulin V-set domain
      cl11960
      Location:162256
      Ig; Immunoglobulin domain
    3. XM_030252915.2XP_030108775.1  immunoglobulin superfamily member 3 isoform X3

      Conserved Domains (3) summary
      smart00410
      Location:293389
      IG_like; Immunoglobulin like
      pfam07686
      Location:687784
      V-set; Immunoglobulin V-set domain
      cl11960
      Location:162256
      Ig; Immunoglobulin domain
    4. XM_036163417.1XP_036019310.1  immunoglobulin superfamily member 3 isoform X2

      Conserved Domains (5) summary
      smart00409
      Location:293389
      IG; Immunoglobulin
      pfam07686
      Location:706803
      V-set; Immunoglobulin V-set domain
      cd00096
      Location:708711
      Ig; Ig strand A' [structural motif]
      cd00099
      Location:152251
      IgV; Immunoglobulin variable domain (IgV)
      cl11960
      Location:840939
      Ig; Immunoglobulin domain
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