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    Tsc22d4 TSC22 domain family, member 4 [ Mus musculus (house mouse) ]

    Gene ID: 78829, updated on 2-Oct-2018

    Summary

    Official Symbol
    Tsc22d4provided by MGI
    Official Full Name
    TSC22 domain family, member 4provided by MGI
    Primary source
    MGI:MGI:1926079
    See related
    Ensembl:ENSMUSG00000029723 Vega:OTTMUSG00000022818
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Tilz2; AI415410; Thg-1pit; 0610009M14Rik; 1700023B23Rik
    Expression
    Ubiquitous expression in thymus adult (RPKM 94.0), heart adult (RPKM 40.5) and 27 other tissues See more
    Orthologs

    Genomic context

    See Tsc22d4 in Genome Data Viewer
    Location:
    5; 5 G2
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 5 NC_000071.6 (137745969..137768453)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 5 NC_000071.5 (138187224..138200975)

    Chromosome 5 - NC_000071.6Genomic Context describing neighboring genes Neighboring gene predicted gene 15753 Neighboring gene neuronal tyrosine-phosphorylated phosphoinositide 3-kinase adaptor 1 Neighboring gene protein phosphatase 1, regulatory subunit 35 Neighboring gene methylphosphate capping enzyme

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    DNA-binding transcription factor activity IEA
    Inferred from Electronic Annotation
    more info
     
    protein binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    protein binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    Process Evidence Code Pubs
    regulation of transcription, DNA-templated IEA
    Inferred from Electronic Annotation
    more info
     
    response to osmotic stress IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    response to osmotic stress IDA
    Inferred from Direct Assay
    more info
    PubMed 
    Component Evidence Code Pubs
    cytoplasm IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    cytoplasm IDA
    Inferred from Direct Assay
    more info
    PubMed 
    nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    nucleus IDA
    Inferred from Direct Assay
    more info
    PubMed 

    General protein information

    Preferred Names
    TSC22 domain family protein 4
    Names
    TSC22 domain family 4
    TSC22-related inducible leucine zipper 2
    TSC22-related-inducible leucine zipper protein 2

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_023910.6NP_076399.4  TSC22 domain family protein 4 isoform 2

      See identical proteins and their annotated locations for NP_076399.4

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) has an alternate exon in place of the last two exons compared to variant 1. The resulting isoform (2) has a shorter and distinct C-terminus compared to isoform 1.
      Source sequence(s)
      AK018735, BY750078
      Consensus CDS
      CCDS19776.1
      UniProtKB/Swiss-Prot
      Q9EQN3
      Related
      ENSMUSP00000098107.3, OTTMUSP00000026237, ENSMUST00000100539.9, OTTMUST00000054925
      Conserved Domains (1) summary
      pfam01166
      Location:318372
      TSC22; TSC-22/dip/bun family
    2. NM_029805.1NP_084081.1  TSC22 domain family protein 4 isoform 1

      See identical proteins and their annotated locations for NP_084081.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) represents the longer transcript and encodes the longer isoform (1).
      Source sequence(s)
      AK155712, BE685784, BY750078
      Consensus CDS
      CCDS57393.1
      UniProtKB/TrEMBL
      Q3U1U6
      Related
      ENSMUSP00000098108.3, OTTMUSP00000026205, ENSMUST00000100540.9, OTTMUST00000054843
      Conserved Domains (1) summary
      pfam15775
      Location:319509
      DUF4703; Domain of unknown function (DUF4703)

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000071.6 Reference GRCm38.p4 C57BL/6J

      Range
      137745969..137768453
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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