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    Plekhj1 pleckstrin homology domain containing, family J member 1 [ Mus musculus (house mouse) ]

    Gene ID: 78670, updated on 31-Jan-2019

    Summary

    Official Symbol
    Plekhj1provided by MGI
    Official Full Name
    pleckstrin homology domain containing, family J member 1provided by MGI
    Primary source
    MGI:MGI:1925920
    See related
    Ensembl:ENSMUSG00000035278
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    9530063M10Rik
    Expression
    Ubiquitous expression in CNS E11.5 (RPKM 26.2), limb E14.5 (RPKM 24.8) and 28 other tissues See more
    Orthologs

    Genomic context

    See Plekhj1 in Genome Data Viewer
    Location:
    10; 10 C1
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 10 NC_000076.6 (80796099..80798626, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 10 NC_000076.5 (80258844..80261371, complement)

    Chromosome 10 - NC_000076.6Genomic Context describing neighboring genes Neighboring gene adaptor-related protein complex 3, delta 1 subunit Neighboring gene DOT1-like, histone H3 methyltransferase (S. cerevisiae) Neighboring gene splicing factor 3a, subunit 2 Neighboring gene anti-Mullerian hormone Neighboring gene junctional sarcoplasmic reticulum protein 1

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (1) 

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    molecular_function ND
    No biological Data available
    more info
     
    Process Evidence Code Pubs
    endosome organization IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    receptor recycling IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    retrograde transport, endosome to Golgi IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    Component Evidence Code Pubs
    early endosome IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    recycling endosome IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    trans-Golgi network IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 

    General protein information

    Preferred Names
    pleckstrin homology domain-containing family J member 1
    Names
    PH domain-containing family J member 1
    guanine nucleotide releasing protein x

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_023900.2NP_076389.2  pleckstrin homology domain-containing family J member 1

      See identical proteins and their annotated locations for NP_076389.2

      Status: VALIDATED

      Source sequence(s)
      AK020621, BE951415, DV657752
      Consensus CDS
      CCDS48640.1
      UniProtKB/Swiss-Prot
      Q9D240
      Related
      ENSMUSP00000042334.5, ENSMUST00000036805.6
      Conserved Domains (2) summary
      cd13258
      Location:1112
      PH_PLEKHJ1; Pleckstrin homology domain containing, family J member 1 Pleckstrin homology (PH) domain
      pfam00169
      Location:25108
      PH; PH domain

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000076.6 Reference GRCm38.p4 C57BL/6J

      Range
      80796099..80798626 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006514326.2XP_006514389.1  pleckstrin homology domain-containing family J member 1 isoform X1

      Conserved Domains (2) summary
      cd13258
      Location:1112
      PH_PLEKHJ1; Pleckstrin homology domain containing, family J member 1 Pleckstrin homology (PH) domain
      pfam00169
      Location:25108
      PH; PH domain
    2. XM_017314166.1XP_017169655.1  pleckstrin homology domain-containing family J member 1 isoform X3

      Conserved Domains (2) summary
      cd13258
      Location:1106
      PH_PLEKHJ1; Pleckstrin homology domain containing, family J member 1 Pleckstrin homology (PH) domain
      pfam00169
      Location:25106
      PH; PH domain
    3. XM_017314165.1XP_017169654.1  pleckstrin homology domain-containing family J member 1 isoform X2

    4. XM_006514327.2XP_006514390.1  pleckstrin homology domain-containing family J member 1 isoform X4

      Conserved Domains (1) summary
      cl17171
      Location:167
      PH-like; Pleckstrin homology-like domain
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