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    Eif3j1 eukaryotic translation initiation factor 3, subunit J1 [ Mus musculus (house mouse) ]

    Gene ID: 78655, updated on 31-Jan-2019

    Summary

    Official Symbol
    Eif3j1provided by MGI
    Official Full Name
    eukaryotic translation initiation factor 3, subunit J1provided by MGI
    Primary source
    MGI:MGI:1925905
    See related
    Ensembl:ENSMUSG00000027236
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Eif3j; C78575; Eif3j2; Eif3s1; Eif3j-1; Eif3j-2; eIF3j-A; eIF3j-B; AA409117; AA409446; eIF3-p35; eIF3-alpha; 1810016I04Rik; 2700079K05Rik; eIF-3-alpha-A; eIF-3-alpha-B
    Expression
    Broad expression in CNS E11.5 (RPKM 29.5), liver E14 (RPKM 27.9) and 26 other tissues See more
    Orthologs

    Genomic context

    See Eif3j1 in Genome Data Viewer
    Location:
    2; 2 E5
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 2 NC_000068.7 (122028580..122053632)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 2 NC_000068.6 (121854359..121879365)

    Chromosome 2 - NC_000068.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 39916 Neighboring gene CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase like 2 Neighboring gene melanoma antigen, family B, 3 Neighboring gene SPG11, spatacsin vesicle trafficking associated Neighboring gene protein associated with topoisomerase II homolog 2 (yeast) Neighboring gene beta-2 microglobulin Neighboring gene tripartite motif-containing 69

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

    Pathways from BioSystems

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Component Evidence Code Pubs
    cytosol ISO
    Inferred from Sequence Orthology
    more info
     
    eukaryotic translation initiation factor 3 complex IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    eukaryotic translation initiation factor 3 complex ISO
    Inferred from Sequence Orthology
    more info
     

    General protein information

    Preferred Names
    eukaryotic translation initiation factor 3 subunit J
    Names
    eukaryotic translation initiation factor 3 subunit 1-A
    eukaryotic translation initiation factor 3 subunit 1-B
    eukaryotic translation initiation factor 3, subunit 1 alpha
    eukaryotic translation initiation factor 3, subunit J

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_144545.4NP_653128.2  eukaryotic translation initiation factor 3 subunit J

      See identical proteins and their annotated locations for NP_653128.2

      Status: VALIDATED

      Source sequence(s)
      AK148004, AK161038, CJ207683
      Consensus CDS
      CCDS38219.1
      UniProtKB/Swiss-Prot
      Q3UGC7
      Related
      ENSMUSP00000028668.7, ENSMUST00000028668.7
      Conserved Domains (1) summary
      pfam08597
      Location:15261
      eIF3_subunit; Translation initiation factor eIF3 subunit

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000068.7 Reference GRCm38.p4 C57BL/6J

      Range
      122028580..122053632
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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