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    Ddx52 DEAD (Asp-Glu-Ala-Asp) box polypeptide 52 [ Mus musculus (house mouse) ]

    Gene ID: 78394, updated on 31-Jan-2019

    Summary

    Official Symbol
    Ddx52provided by MGI
    Official Full Name
    DEAD (Asp-Glu-Ala-Asp) box polypeptide 52provided by MGI
    Primary source
    MGI:MGI:1925644
    See related
    Ensembl:ENSMUSG00000020677
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    ROK1; 2700029C06Rik
    Expression
    Ubiquitous expression in CNS E11.5 (RPKM 11.1), placenta adult (RPKM 9.6) and 24 other tissues See more
    Orthologs

    Genomic context

    See Ddx52 in Genome Data Viewer
    Location:
    11; 11 C
    Exon count:
    15
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 11 NC_000077.6 (83942090..83963088)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 11 NC_000077.5 (83755592..83776590)

    Chromosome 11 - NC_000077.6Genomic Context describing neighboring genes Neighboring gene predicted gene, 38934 Neighboring gene predicted gene 12576 Neighboring gene HNF1 homeobox B Neighboring gene synergin, gamma Neighboring gene dual specificity phosphatase 14

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Targeted (1) 

    Pathways from BioSystems

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    ATP binding IEA
    Inferred from Electronic Annotation
    more info
     
    RNA binding IEA
    Inferred from Electronic Annotation
    more info
     
    helicase activity IEA
    Inferred from Electronic Annotation
    more info
     
    hydrolase activity IEA
    Inferred from Electronic Annotation
    more info
     
    nucleic acid binding IEA
    Inferred from Electronic Annotation
    more info
     
    nucleotide binding IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    nucleus IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    probable ATP-dependent RNA helicase DDX52
    Names
    DEAD box protein 52
    DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 52
    NP_084372.2

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_030096.2NP_084372.2  probable ATP-dependent RNA helicase DDX52

      See identical proteins and their annotated locations for NP_084372.2

      Status: VALIDATED

      Source sequence(s)
      AK141200, AK166789, AL645615, CJ142321, CN539261
      Consensus CDS
      CCDS25180.1
      UniProtKB/Swiss-Prot
      Q8K301
      UniProtKB/TrEMBL
      Q3TKX4
      Related
      ENSMUSP00000048802.7, ENSMUST00000049257.7
      Conserved Domains (3) summary
      PRK11192
      Location:163597
      PRK11192; ATP-dependent RNA helicase SrmB; Provisional
      pfam00271
      Location:399508
      Helicase_C; Helicase conserved C-terminal domain
      cl21455
      Location:170376
      P-loop_NTPase; P-loop containing Nucleoside Triphosphate Hydrolases

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000077.6 Reference GRCm38.p4 C57BL/6J

      Range
      83942090..83963088
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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