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    Tmem50b transmembrane protein 50B [ Mus musculus (house mouse) ]

    Gene ID: 77975, updated on 23-Jun-2021

    Summary

    Official Symbol
    Tmem50bprovided by MGI
    Official Full Name
    transmembrane protein 50Bprovided by MGI
    Primary source
    MGI:MGI:1925225
    See related
    Ensembl:ENSMUSG00000022964
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    AU015466; AU019872; B230114J08Rik
    Expression
    Ubiquitous expression in lung adult (RPKM 45.7), cerebellum adult (RPKM 39.3) and 26 other tissues See more
    Orthologs
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    Genomic context

    See Tmem50b in Genome Data Viewer
    Location:
    16; 16 C3.3
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    109 current GRCm39 (GCF_000001635.27) 16 NC_000082.7 (91371390..91394568, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 16 NC_000082.6 (91574508..91597680, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 16 NC_000082.5 (91574753..91597925, complement)

    Chromosome 16 - NC_000082.7Genomic Context describing neighboring genes Neighboring gene ribosomal protein S2 pseudogene Neighboring gene interferon gamma receptor 2 Neighboring gene DnaJ heat shock protein family (Hsp40) member C28 Neighboring gene phosphoribosylglycinamide formyltransferase

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Process Evidence Code Pubs
    involved_in late endosome to vacuole transport via multivesicular body sorting pathway IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    Component Evidence Code Pubs
    located_in Golgi apparatus IEA
    Inferred from Electronic Annotation
    more info
     
    located_in endoplasmic reticulum ISO
    Inferred from Sequence Orthology
    more info
     
    located_in integral component of membrane IEA
    Inferred from Electronic Annotation
    more info
     
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
     

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_030018.3NP_084294.1  transmembrane protein 50B

      See identical proteins and their annotated locations for NP_084294.1

      Status: PROVISIONAL

      Source sequence(s)
      BC004841
      Consensus CDS
      CCDS28328.1
      UniProtKB/Swiss-Prot
      Q9D1X9
      Related
      ENSMUSP00000023686.9, ENSMUST00000023686.15
      Conserved Domains (1) summary
      pfam05255
      Location:9157
      UPF0220; Uncharacterized protein family (UPF0220)

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000082.7 Reference GRCm39 C57BL/6J

      Range
      91371390..91394568 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_036160181.1XP_036016074.1  transmembrane protein 50B isoform X1

      Conserved Domains (1) summary
      pfam05255
      Location:9157
      UPF0220; Uncharacterized protein family (UPF0220)
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