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    Yipf6 Yip1 domain family, member 6 [ Mus musculus (house mouse) ]

    Gene ID: 77929, updated on 16-Jul-2021

    Summary

    Official Symbol
    Yipf6provided by MGI
    Official Full Name
    Yip1 domain family, member 6provided by MGI
    Primary source
    MGI:MGI:1925179
    See related
    Ensembl:ENSMUSG00000047694
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    A430107J06Rik
    Expression
    Ubiquitous expression in bladder adult (RPKM 7.2), placenta adult (RPKM 5.4) and 28 other tissues See more
    Orthologs
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    Genomic context

    See Yipf6 in Genome Data Viewer
    Location:
    X; X C3
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    109 current GRCm39 (GCF_000001635.27) X NC_000086.8 (97979922..97992627)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) X NC_000086.7 (98936316..98949021)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) X NC_000086.6 (96133120..96144360)

    Chromosome X - NC_000086.8Genomic Context describing neighboring genes Neighboring gene oligophrenin 1 Neighboring gene predicted gene, 26000 Neighboring gene small nucleolar RNA SNORA48 Neighboring gene protein (peptidyl-prolyl cis/trans isomerase) NIMA-interacting, 4 (parvulin) pseudogene Neighboring gene predicted gene, 52477

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Chemically induced (ENU) (1)  1 citation
    • Endonuclease-mediated (1) 

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Clone Names

    • MGC59484

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables identical protein binding IDA
    Inferred from Direct Assay
    more info
    PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within intestinal epithelial cell development IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    Component Evidence Code Pubs
    located_in COPII-coated ER to Golgi transport vesicle IDA
    Inferred from Direct Assay
    more info
    PubMed 
    located_in Golgi apparatus IEA
    Inferred from Electronic Annotation
    more info
     
    located_in Golgi medial cisterna ISO
    Inferred from Sequence Orthology
    more info
     
    located_in Golgi trans cisterna ISO
    Inferred from Sequence Orthology
    more info
     
    located_in cis-Golgi network IDA
    Inferred from Direct Assay
    more info
    PubMed 
    located_in endoplasmic reticulum ISO
    Inferred from Sequence Orthology
    more info
     
    located_in integral component of membrane IEA
    Inferred from Electronic Annotation
    more info
     
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
     
    is_active_in trans-Golgi network IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    located_in trans-Golgi network IDA
    Inferred from Direct Assay
    more info
    PubMed 
    located_in trans-Golgi network ISO
    Inferred from Sequence Orthology
    more info
     

    General protein information

    Preferred Names
    protein YIPF6
    Names
    YIP1 family member 6

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_207633.2NP_997516.1  protein YIPF6

      See identical proteins and their annotated locations for NP_997516.1

      Status: VALIDATED

      Source sequence(s)
      AK030473, AL672103, BB642656
      Consensus CDS
      CCDS30296.1
      UniProtKB/Swiss-Prot
      Q8BR70
      Related
      ENSMUSP00000056039.6, ENSMUST00000054697.7
      Conserved Domains (1) summary
      cl21557
      Location:2232
      Yip1; Yip1 domain

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000086.8 Reference GRCm39 C57BL/6J

      Range
      97979922..97992627
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006528337.3XP_006528400.1  protein YIPF6 isoform X1

      Conserved Domains (1) summary
      cl21557
      Location:19249
      Yip1; Yip1 domain
    2. XM_006528338.5XP_006528401.3  protein YIPF6 isoform X2

      Conserved Domains (1) summary
      cl21557
      Location:2232
      Yip1; Yip1 domain
    3. XM_006528339.5XP_006528402.3  protein YIPF6 isoform X2

      Related
      ENSMUSP00000117981.2, ENSMUST00000151353.8
      Conserved Domains (1) summary
      cl21557
      Location:2232
      Yip1; Yip1 domain

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_030007.1: Suppressed sequence

      Description
      NM_030007.1: This RefSeq record was removed by NCBI staff. Contact info@ncbi.nlm.nih.gov for further information.
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