Format

Send to:

Choose Destination
    • Showing Current items.

    6030458C11Rik RIKEN cDNA 6030458C11 gene [ Mus musculus (house mouse) ]

    Gene ID: 77877, updated on 23-Jun-2021

    Summary

    Official Symbol
    6030458C11Rikprovided by MGI
    Official Full Name
    RIKEN cDNA 6030458C11 geneprovided by MGI
    Primary source
    MGI:MGI:1925127
    See related
    Ensembl:ENSMUSG00000022195
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Expression
    Ubiquitous expression in liver E14 (RPKM 7.9), liver E14.5 (RPKM 7.7) and 28 other tissues See more
    Orthologs
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    See 6030458C11Rik in Genome Data Viewer
    Location:
    15; 15 A1
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    109 current GRCm39 (GCF_000001635.27) 15 NC_000081.7 (12808263..12824767, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 15 NC_000081.6 (12808177..12824679, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 15 NC_000081.5 (12737932..12754412, complement)

    Chromosome 15 - NC_000081.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 17756 Neighboring gene predicted gene, 41274 Neighboring gene drosha, ribonuclease type III Neighboring gene cadherin 6 Neighboring gene predicted gene, 35018

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    General gene information

    Markers

    Homology

    Clone Names

    • MGC118638

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
     
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
     
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
     

    General protein information

    Preferred Names
    UPF0489 protein C5orf22 homolog

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001166360.1NP_001159832.1  UPF0489 protein C5orf22 homolog isoform a

      See identical proteins and their annotated locations for NP_001159832.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) contains a distinct 3' UTR and lacks most of the 3' coding region, compared to variant 1. These differences result in a protein (isoform a) with a shorter C-terminus, compared to isoform b.
      Source sequence(s)
      AK078182, BY782674
      UniProtKB/Swiss-Prot
      Q8BGC1
      Related
      ENSMUST00000228888.2
      Conserved Domains (1) summary
      pfam12640
      Location:19104
      UPF0489; UPF0489 domain
    2. NM_001357761.1NP_001344690.1  UPF0489 protein C5orf22 homolog isoform c

      Status: VALIDATED

      Description
      Transcript Variant: This variant (3) lacks an alternate in-frame exon in the 5' coding region and uses a downstream start codon compared to variant 2. It encodes isoform c which has a shorter N-terminus compared to isoform b.
      Source sequence(s)
      AC133189
      Consensus CDS
      CCDS88737.1
      Related
      ENSMUSP00000154605.2, ENSMUST00000227299.2
      Conserved Domains (1) summary
      pfam12640
      Location:195
      UPF0489; UPF0489 domain
    3. NM_029998.3NP_084274.1  UPF0489 protein C5orf22 homolog isoform b

      See identical proteins and their annotated locations for NP_084274.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) represents the longest transcript and encodes the longest isoform (b).
      Source sequence(s)
      AK035859, AK054133, BB347137, BY782674
      Consensus CDS
      CCDS27392.1
      UniProtKB/Swiss-Prot
      Q8BGC1
      Related
      ENSMUSP00000055656.4, ENSMUST00000057256.5
      Conserved Domains (1) summary
      pfam12640
      Location:19169
      UPF0489; UPF0489 domain

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000081.7 Reference GRCm39 C57BL/6J

      Range
      12808263..12824767 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_036159632.1XP_036015525.1  UPF0489 protein C5orf22 homolog isoform X1

      Conserved Domains (1) summary
      pfam12640
      Location:19169
      UPF0489; UPF0489 domain
    2. XM_036159633.1XP_036015526.1  UPF0489 protein C5orf22 homolog isoform X2

      Conserved Domains (1) summary
      pfam12640
      Location:19169
      UPF0489; UPF0489 domain

    RNA

    1. XR_004938878.1 RNA Sequence

    Support Center