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    Ypel2 yippee like 2 [ Mus musculus (house mouse) ]

    Gene ID: 77864, updated on 5-Aug-2018

    Summary

    Official Symbol
    Ypel2provided by MGI
    Official Full Name
    yippee like 2provided by MGI
    Primary source
    MGI:MGI:1925114
    See related
    Ensembl:ENSMUSG00000018427 Vega:OTTMUSG00000001220
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    6430570G24; E130113K08Rik
    Expression
    Ubiquitous expression in ovary adult (RPKM 5.5), frontal lobe adult (RPKM 5.5) and 28 other tissues See more
    Orthologs

    Genomic context

    See Ypel2 in Genome Data Viewer
    Location:
    11; 11 C
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 11 NC_000077.6 (86936425..86993843, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 11 NC_000077.5 (86749927..86807264, complement)

    Chromosome 11 - NC_000077.6Genomic Context describing neighboring genes Neighboring gene predicted gene, 33742 Neighboring gene predicted gene, 38942 Neighboring gene predicted gene, 46290 Neighboring gene glycerophosphodiester phosphodiesterase domain containing 1 Neighboring gene smg-8 homolog, nonsense mediated mRNA decay factor (C. elegans)

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (1) 

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    metal ion binding IEA
    Inferred from Electronic Annotation
    more info
     
    molecular_function ND
    No biological Data available
    more info
     
    Process Evidence Code Pubs
    biological_process ND
    No biological Data available
    more info
     
    Component Evidence Code Pubs
    cellular_component ND
    No biological Data available
    more info
     
    nucleus IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    protein yippee-like 2
    Names
    ortholog of human yippee-like 2 YPEL2

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001005341.3NP_001005341.1  protein yippee-like 2

      See identical proteins and their annotated locations for NP_001005341.1

      Status: VALIDATED

      Source sequence(s)
      BB656522, BC121190, BY768876
      Consensus CDS
      CCDS25205.1
      UniProtKB/Swiss-Prot
      Q65Z95
      UniProtKB/TrEMBL
      Q0VA86
      Related
      ENSMUSP00000018571.4, OTTMUSP00000001203, ENSMUST00000018571.4, OTTMUST00000002443
      Conserved Domains (1) summary
      cl13152
      Location:21110
      RLR_C_like; C-terminal domain of Retinoic acid-inducible gene (RIG)-I-like Receptors, Cereblon (CRBN), and similar protein domains

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000077.6 Reference GRCm38.p4 C57BL/6J

      Range
      86936425..86993843 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_011249316.2XP_011247618.1  protein yippee-like 2 isoform X1

      See identical proteins and their annotated locations for XP_011247618.1

    Reference GRCm38.p4 NOD/ShiLtJ

    Genomic

    1. NT_187003.1 Reference GRCm38.p4 NOD/ShiLtJ

      Range
      66643..123979 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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