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    Lrrc42 leucine rich repeat containing 42 [ Mus musculus (house mouse) ]

    Gene ID: 77809, updated on 23-Jun-2021

    Summary

    Official Symbol
    Lrrc42provided by MGI
    Official Full Name
    leucine rich repeat containing 42provided by MGI
    Primary source
    MGI:MGI:1925059
    See related
    Ensembl:ENSMUSG00000028617
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    AA536996; A930011F22Rik
    Expression
    Ubiquitous expression in thymus adult (RPKM 16.7), limb E14.5 (RPKM 15.6) and 28 other tissues See more
    Orthologs
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    Genomic context

    See Lrrc42 in Genome Data Viewer
    Location:
    4; 4 C7
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    109 current GRCm39 (GCF_000001635.27) 4 NC_000070.7 (107090711..107110730, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 4 NC_000070.6 (107233514..107253533, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 4 NC_000070.5 (106906119..106926138, complement)

    Chromosome 4 - NC_000070.7Genomic Context describing neighboring genes Neighboring gene transmembrane protein 59 Neighboring gene low density lipoprotein receptor class A domain containing 1 Neighboring gene heat shock protein family B (small), member 11 Neighboring gene Yip1 domain family, member 1 Neighboring gene deiodinase, iodothyronine, type I

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
     
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
     
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
     

    General protein information

    Preferred Names
    leucine-rich repeat-containing protein 42

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_029985.2NP_084261.1  leucine-rich repeat-containing protein 42

      See identical proteins and their annotated locations for NP_084261.1

      Status: VALIDATED

      Source sequence(s)
      BC027203, BX632859, CJ174174
      Consensus CDS
      CCDS18434.1
      UniProtKB/Swiss-Prot
      Q8R2U7
      Related
      ENSMUSP00000030360.5, ENSMUST00000030360.11
      Conserved Domains (2) summary
      cd00116
      Location:167272
      LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
      sd00034
      Location:150174
      LRR_AMN1; leucine-rich repeat [structural motif]

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000070.7 Reference GRCm39 C57BL/6J

      Range
      107090711..107110730 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_036164551.1XP_036020444.1  leucine-rich repeat-containing protein 42 isoform X1

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