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    Wdr82 WD repeat domain containing 82 [ Mus musculus (house mouse) ]

    Gene ID: 77305, updated on 23-Jun-2021

    Summary

    Official Symbol
    Wdr82provided by MGI
    Official Full Name
    WD repeat domain containing 82provided by MGI
    Primary source
    MGI:MGI:1924555
    See related
    Ensembl:ENSMUSG00000020257
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    CDW5/WDR82; 9430077D24Rik
    Expression
    Ubiquitous expression in CNS E18 (RPKM 44.3), whole brain E14.5 (RPKM 43.4) and 28 other tissues See more
    Orthologs
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    Genomic context

    See Wdr82 in Genome Data Viewer
    Location:
    9; 9 F1
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    109 current GRCm39 (GCF_000001635.27) 9 NC_000075.7 (106048098..106068905)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 9 NC_000075.6 (106170925..106191706)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 9 NC_000075.5 (106073260..106094037)

    Chromosome 9 - NC_000075.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 51688 Neighboring gene RIKEN cDNA D030055H07 gene Neighboring gene microRNA 135a-1 Neighboring gene glycerate kinase Neighboring gene microRNA let7g Neighboring gene protein phosphatase 1M Neighboring gene twinfilin actin binding protein 2

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (1) 

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables chromatin binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    enables chromatin binding IDA
    Inferred from Direct Assay
    more info
    PubMed 
    contributes_to histone methyltransferase activity (H3-K4 specific) ISO
    Inferred from Sequence Orthology
    more info
     
    Process Evidence Code Pubs
    acts_upstream_of_or_within histone H3-K4 methylation IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    involved_in histone H3-K4 methylation ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in histone H3-K4 trimethylation IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    Component Evidence Code Pubs
    part_of PTW/PP1 phosphatase complex ISO
    Inferred from Sequence Orthology
    more info
     
    part_of Set1C/COMPASS complex IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    part_of Set1C/COMPASS complex ISO
    Inferred from Sequence Orthology
    more info
     
    located_in chromatin ISO
    Inferred from Sequence Orthology
    more info
     
    colocalizes_with chromosome, telomeric region ISO
    Inferred from Sequence Orthology
    more info
     
    part_of histone methyltransferase complex ISO
    Inferred from Sequence Orthology
    more info
     
    located_in nucleolus ISO
    Inferred from Sequence Orthology
    more info
     
    located_in nucleus IDA
    Inferred from Direct Assay
    more info
    PubMed 

    General protein information

    Preferred Names
    WD repeat-containing protein 82

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_029896.1NP_084172.1  WD repeat-containing protein 82

      See identical proteins and their annotated locations for NP_084172.1

      Status: VALIDATED

      Source sequence(s)
      AK037620, AK159240, AK162537, AW044996, CK621157, CN722892
      Consensus CDS
      CCDS40754.1
      UniProtKB/Swiss-Prot
      Q8BFQ4
      UniProtKB/TrEMBL
      B2RXQ8
      Related
      ENSMUSP00000020490.6, ENSMUST00000020490.13
      Conserved Domains (2) summary
      cd00200
      Location:15300
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
      sd00039
      Location:2461
      7WD40; WD40 repeat [structural motif]

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000075.7 Reference GRCm39 C57BL/6J

      Range
      106048098..106068905
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_030244715.2XP_030100575.1  WD repeat-containing protein 82 isoform X1

      Conserved Domains (2) summary
      sd00039
      Location:948
      7WD40; WD40 repeat [structural motif]
      cl29593
      Location:9156
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
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