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    Gpbp1l1 GC-rich promoter binding protein 1-like 1 [ Mus musculus (house mouse) ]

    Gene ID: 77110, updated on 23-Jun-2021

    Summary

    Official Symbol
    Gpbp1l1provided by MGI
    Official Full Name
    GC-rich promoter binding protein 1-like 1provided by MGI
    Primary source
    MGI:MGI:1924360
    See related
    Ensembl:ENSMUSG00000034042
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    BC002292; 5330440M15Rik
    Expression
    Ubiquitous expression in large intestine adult (RPKM 15.8), thymus adult (RPKM 14.8) and 28 other tissues See more
    Orthologs
    NEW
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    Genomic context

    See Gpbp1l1 in Genome Data Viewer
    Location:
    4; 4 D1
    Exon count:
    14
    Annotation release Status Assembly Chr Location
    109 current GRCm39 (GCF_000001635.27) 4 NC_000070.7 (116414357..116451099)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 4 NC_000070.6 (116557179..116593902)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 4 NC_000070.5 (116230332..116266487)

    Chromosome 4 - NC_000070.7Genomic Context describing neighboring genes Neighboring gene IAP promoted placental gene Neighboring gene transmembrane protein 69 Neighboring gene RIKEN cDNA C530005A16 gene Neighboring gene coiled-coil domain containing 17 Neighboring gene nuclear autoantigenic sperm protein (histone-binding)

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Targeted (1) 

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Homology

    Clone Names

    • MGC8183

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
     
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
     
    Process Evidence Code Pubs
    involved_in positive regulation of transcription, DNA-templated IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in regulation of transcription, DNA-templated IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    involved_in transcription, DNA-templated IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    is_active_in nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001368177.1NP_001355106.1  vasculin-like protein 1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) differs in the 5' UTR compared to variant 1. Variants 1 and 2 both encode the same protein.
      Source sequence(s)
      AK077148, AL669953, BC066034
      Consensus CDS
      CCDS18511.1
      Related
      ENSMUSP00000102083.2, ENSMUST00000106475.2
      Conserved Domains (1) summary
      pfam15337
      Location:379449
      Vasculin; Vascular protein family Vasculin-like 1
    2. NM_029868.3NP_084144.2  vasculin-like protein 1

      See identical proteins and their annotated locations for NP_084144.2

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) represents the longer transcript. Variants 1 and 2 both encode the same protein.
      Source sequence(s)
      AK037224, AL669953, BC066034, BY073105
      Consensus CDS
      CCDS18511.1
      UniProtKB/Swiss-Prot
      Q6NZP2
      Related
      ENSMUSP00000030460.9, ENSMUST00000030460.15
      Conserved Domains (1) summary
      pfam15337
      Location:379449
      Vasculin; Vascular protein family Vasculin-like 1

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000070.7 Reference GRCm39 C57BL/6J

      Range
      116414357..116451099
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_017320452.3XP_017175941.1  vasculin-like protein 1 isoform X1

      UniProtKB/Swiss-Prot
      Q6NZP2
      Conserved Domains (1) summary
      pfam15337
      Location:379449
      Vasculin; Vascular protein family Vasculin-like 1
    2. XM_006503485.5XP_006503548.1  vasculin-like protein 1 isoform X1

      See identical proteins and their annotated locations for XP_006503548.1

      UniProtKB/Swiss-Prot
      Q6NZP2
      Conserved Domains (1) summary
      pfam15337
      Location:379449
      Vasculin; Vascular protein family Vasculin-like 1
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