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    Arid2 AT rich interactive domain 2 (ARID, RFX-like) [ Mus musculus (house mouse) ]

    Gene ID: 77044, updated on 31-Jan-2019

    Summary

    Official Symbol
    Arid2provided by MGI
    Official Full Name
    AT rich interactive domain 2 (ARID, RFX-like)provided by MGI
    Primary source
    MGI:MGI:1924294
    See related
    Ensembl:ENSMUSG00000033237
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    BAF200; zipzap/p200; 1700124K17Rik; 4432409D24Rik
    Expression
    Ubiquitous expression in testis adult (RPKM 32.0), thymus adult (RPKM 22.9) and 28 other tissues See more
    Orthologs

    Genomic context

    See Arid2 in Genome Data Viewer
    Location:
    15; 15 F1
    Exon count:
    21
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 15 NC_000081.6 (96287522..96405463)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 15 NC_000081.5 (96117953..96235894)

    Chromosome 15 - NC_000081.6Genomic Context describing neighboring genes Neighboring gene predicted gene, 38469 Neighboring gene RIKEN cDNA 4833422M21 gene Neighboring gene RIKEN cDNA E330033B04 gene Neighboring gene ribosomal protein S2 pseudogene Neighboring gene SR-related CTD-associated factor 11 Neighboring gene predicted gene, 41392

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Targeted (1) 

    Pathways from BioSystems

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    DNA binding IEA
    Inferred from Electronic Annotation
    more info
     
    metal ion binding IEA
    Inferred from Electronic Annotation
    more info
     
    nucleic acid binding IEA
    Inferred from Electronic Annotation
    more info
     
    transcription factor binding ISO
    Inferred from Sequence Orthology
    more info
    PubMed 
    Process Evidence Code Pubs
    cardiac muscle cell proliferation IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    cardiovascular system development IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    chromatin organization IEA
    Inferred from Electronic Annotation
    more info
     
    coronary artery morphogenesis IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    embryonic organ development IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    heart morphogenesis IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    homeostatic process IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    negative regulation of cell migration ISO
    Inferred from Sequence Orthology
    more info
     
    negative regulation of cell proliferation ISO
    Inferred from Sequence Orthology
    more info
     
    nucleosome disassembly ISO
    Inferred from Sequence Orthology
    more info
     
    positive regulation of transcription by RNA polymerase II ISO
    Inferred from Sequence Orthology
    more info
    PubMed 
    regulation of transcription, DNA-templated IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    nucleoplasm ISO
    Inferred from Sequence Orthology
    more info
     
    nucleus IEA
    Inferred from Electronic Annotation
    more info
     
    plasma membrane ISO
    Inferred from Sequence Orthology
    more info
     
    transcription factor complex ISO
    Inferred from Sequence Orthology
    more info
    PubMed 

    General protein information

    Preferred Names
    AT-rich interactive domain-containing protein 2
    Names
    ARID domain-containing protein 2
    AT rich interactive domain 2 (Arid-rfx like)
    BRG1-associated factor 200
    zinc finger protein with activation potential
    zipzap

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_175251.4NP_780460.3  AT-rich interactive domain-containing protein 2

      Status: VALIDATED

      Source sequence(s)
      AC133578, AK007269, AK077366, BU056807, CA749551, CK781204, CV559640
      Consensus CDS
      CCDS37185.2
      UniProtKB/Swiss-Prot
      E9Q7E2
      UniProtKB/TrEMBL
      Q9D982
      Related
      ENSMUSP00000093969.4, ENSMUST00000096250.4
      Conserved Domains (4) summary
      pfam01388
      Location:19101
      ARID; ARID/BRIGHT DNA binding domain
      pfam02257
      Location:521601
      RFX_DNA_binding; RFX DNA-binding domain
      cl26464
      Location:603910
      Atrophin-1; Atrophin-1 family
      cl26809
      Location:12781575
      Sec23_BS; Sec23/Sec24 beta-sandwich domain

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000081.6 Reference GRCm38.p4 C57BL/6J

      Range
      96287522..96405463
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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