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    ZNF143 zinc finger protein 143 [ Homo sapiens (human) ]

    Gene ID: 7702, updated on 3-Apr-2024

    Summary

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    Official Symbol
    ZNF143provided by HGNC
    Official Full Name
    zinc finger protein 143provided by HGNC
    Primary source
    HGNC:HGNC:12928
    See related
    Ensembl:ENSG00000166478 MIM:603433; AllianceGenome:HGNC:12928
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    SBF; STAF; pHZ-1
    Summary
    Enables DNA-binding transcription activator activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Involved in positive regulation of snRNA transcription by RNA polymerase II. Predicted to be located in nucleoplasm. [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Ubiquitous expression in testis (RPKM 5.8), lymph node (RPKM 4.3) and 25 other tissues See more
    Orthologs
    mouse all
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    Genomic context

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    See ZNF143 in Genome Data Viewer
    Location:
    11p15.4
    Exon count:
    20
    Annotation release Status Assembly Chr Location
    RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 11 NC_000011.10 (9461012..9528524)
    RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 11 NC_060935.1 (9546141..9612748)
    105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 11 NC_000011.9 (9482559..9550071)

    Chromosome 11 - NC_000011.10Genomic Context describing neighboring genes Neighboring gene importin 7 Neighboring gene Sharpr-MPRA regulatory region 11606 Neighboring gene small nucleolar RNA, H/ACA box 23 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr11:9480928-9481563 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 4406 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 4407 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 4408 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 3126 Neighboring gene uncharacterized LOC644656 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 3127 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr11:9537259-9537799 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr11:9551203-9551929 Neighboring gene CRISPRi-validated cis-regulatory element chr11.1006 Neighboring gene H3K27ac hESC enhancer GRCh37_chr11:9584901-9585400 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 4409 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 3128 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr11:9594443-9595295 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 3131 Neighboring gene small nucleolar RNA U13 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 3132 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 3133 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 4410 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 4411 Neighboring gene WEE1 G2 checkpoint kinase Neighboring gene ATAC-STARR-seq lymphoblastoid active region 4412 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr11:9622289-9622842 Neighboring gene ribosomal protein L23a pseudogene 65

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

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    Related articles in PubMed

    1. ZNF143 regulates autophagic flux to alleviate myocardial ischemia/reperfusion injury through Raptor. Rao P, et al. Cell Signal, 2022 Nov. PMID 35988805
    2. ZNF143 Expression is Associated with COPD and Tumor Microenvironment in Non-Small Cell Lung Cancer. Feng Z, et al. Int J Chron Obstruct Pulmon Dis, 2022. PMID 35400998, Free PMC Article
    3. ZNF143 is dynamically bound to a subset of its interphase sites during mitosis. Ye B, et al. Biochem Biophys Res Commun, 2020 Mar 5. PMID 31864705
    4. The Role of ZNF143 in Breast Cancer Cell Survival Through the NAD(P)H Quinone Dehydrogenase 1⁻p53⁻Beclin1 Axis Under Metabolic Stress. Paek AR, et al. Cells, 2019 Mar 30. PMID 30935019, Free PMC Article
    5. YPC-21661 and YPC-22026, novel small molecules, inhibit ZNF143 activity in vitro and in vivo. Haibara H, et al. Cancer Sci, 2017 May. PMID 28192620, Free PMC Article

    See all (63) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. LOC644656 promotes cisplatin resistance in cervical cancer by recruiting ZNF143 and activating the transcription of E6-AP.
      Title: LOC644656 promotes cisplatin resistance in cervical cancer by recruiting ZNF143 and activating the transcription of E6-AP.
    2. ZNF143 facilitates the growth and migration of glioma cells by regulating KPNA2-mediated Hippo signalling.
      Title: ZNF143 facilitates the growth and migration of glioma cells by regulating KPNA2-mediated Hippo signalling.
    3. ATF1 promotes the malignancy of lung adenocarcinoma cells by transcriptionally regulating ZNF143 expression.
      Title: ATF1 promotes the malignancy of lung adenocarcinoma cells by transcriptionally regulating ZNF143 expression.
    4. ZNF143 regulates autophagic flux to alleviate myocardial ischemia/reperfusion injury through Raptor.
      Title: ZNF143 regulates autophagic flux to alleviate myocardial ischemia/reperfusion injury through Raptor.
    5. ZNF143 Expression is Associated with COPD and Tumor Microenvironment in Non-Small Cell Lung Cancer.
      Title: ZNF143 Expression is Associated with COPD and Tumor Microenvironment in Non-Small Cell Lung Cancer.
    6. BUB1B (BUB1 Mitotic Checkpoint Serine/Threonine Kinase B) promotes lung adenocarcinoma by interacting with Zinc Finger Protein ZNF143 and regulating glycolysis.
      Title: BUB1B (BUB1 Mitotic Checkpoint Serine/Threonine Kinase B) promotes lung adenocarcinoma by interacting with Zinc Finger Protein ZNF143 and regulating glycolysis.
    7. DNA methylome analysis identifies BMI-related epigenetic changes associated with non-small cell lung cancer susceptibility.
      Title: DNA methylome analysis identifies BMI-related epigenetic changes associated with non-small cell lung cancer susceptibility.
    8. ZNF143-Mediated H3K9 Trimethylation Upregulates CDC6 by Activating MDIG in Hepatocellular Carcinoma.
      Title: ZNF143-Mediated H3K9 Trimethylation Upregulates CDC6 by Activating MDIG in Hepatocellular Carcinoma.
    9. ZNF143 Suppresses Cell Apoptosis and Promotes Proliferation in Gastric Cancer via ROS/p53 Axis.
      Title: ZNF143 Suppresses Cell Apoptosis and Promotes Proliferation in Gastric Cancer via ROS/p53 Axis.
    10. LIN28B regulates transcription and potentiates MYCN-induced neuroblastoma through binding to ZNF143 at target gene promotors.
      Title: LIN28B regulates transcription and potentiates MYCN-induced neuroblastoma through binding to ZNF143 at target gene promotors.
    Submit: New GeneRIF Correction See all GeneRIFs (35)

    Phenotypes

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    Find tests for this gene in the NIH Genetic Testing Registry (GTR)

    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    Genotypes

    Pathways from PubChem

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    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by GOA

    Function Evidence Code Pubs
    enables DNA-binding transcription activator activity, RNA polymerase II-specific IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables chromatin binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in positive regulation of smooth muscle cell proliferation IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in positive regulation of snRNA transcription by RNA polymerase II EXP
    Inferred from Experiment
    more info
    		 PubMed 
    involved_in positive regulation of transcription by RNA polymerase II EXP
    Inferred from Experiment
    more info
    		 PubMed 
    involved_in positive regulation of transcription by RNA polymerase II IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    involved_in positive regulation of transcription by RNA polymerase III TAS
    Traceable Author Statement
    more info
    		 PubMed 
    involved_in regulation of DNA-templated transcription IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    involved_in regulation of transcription by RNA polymerase II TAS
    Traceable Author Statement
    more info
    		 PubMed 
    involved_in regulation of transcription by RNA polymerase III TAS
    Traceable Author Statement
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleoplasm TAS
    Traceable Author Statement
    more info
    		  

    General protein information

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    Preferred Names
    zinc finger protein 143
    Names
    SPH-binding factor
    hStaf
    selenocysteine tRNA gene transcription-activating factor
    transcriptional activator Staf
    NP_001269585.1
    NP_001269586.1
    NP_003433.3
    XP_005253178.1
    XP_005253179.1
    XP_011518651.1
    XP_016873741.1
    XP_016873742.1
    XP_016873743.1
    XP_016873744.1
    XP_047283508.1
    XP_047283509.1
    XP_047283510.1
    XP_047283511.1
    XP_047283512.1
    XP_047283513.1
    XP_047283514.1
    XP_047283515.1
    XP_047283516.1
    XP_047283517.1
    XP_047283518.1
    XP_054225845.1
    XP_054225846.1
    XP_054225847.1
    XP_054225848.1
    XP_054225849.1
    XP_054225850.1
    XP_054225851.1
    XP_054225852.1
    XP_054225853.1
    XP_054225854.1
    XP_054225855.1
    XP_054225856.1
    XP_054225857.1
    XP_054225858.1
    XP_054225859.1
    XP_054225860.1
    XP_054225861.1
    XP_054225862.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001282656.2 → NP_001269585.1  zinc finger protein 143 isoform 2

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) uses an alternate in-frame splice site in the 5' coding region, compared to variant 1, resulting in an isoform (2) that is 1 aa shorter than isoform 1.
      Source sequence(s)
      AK297214, AK313330, BF515092, BG825506, CN295530
      Consensus CDS
      CCDS60720.1
      UniProtKB/TrEMBL
      E7EN86
      Related
      ENSP00000432154.1, ENST00000530463.5
      Conserved Domains (4) summary
      COG5048
      Location:263 → 321
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:238 → 260
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam13465
      Location:312 → 339
      zf-H2C2_2; Zinc-finger double domain
      pfam15909
      Location:298 → 413
      zf-C2H2_8; C2H2-type zinc ribbon

    2. NM_001282657.2 → NP_001269586.1  zinc finger protein 143 isoform 3

      Status: VALIDATED

      Description
      Transcript Variant: This variant (3) lacks an alternate in-frame exon in the 5' coding region, compared to variant 1, resulting in an isoform (3) that is shorter than isoform 1.
      Source sequence(s)
      AK297214, BC014458, BF515092, BG825506, CN295530
      Consensus CDS
      CCDS60721.1
      UniProtKB/TrEMBL
      E7EN86
      Related
      ENSP00000379843.3, ENST00000396597.7
      Conserved Domains (5) summary
      COG5048
      Location:233 → 291
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:208 → 230
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam13465
      Location:282 → 309
      zf-H2C2_2; Zinc-finger double domain
      pfam15909
      Location:268 → 383
      zf-C2H2_8; C2H2-type zinc ribbon
      cl00342
      Location:51 → 161
      Trp-synth-beta_II; Tryptophan synthase beta superfamily (fold type II); this family of pyridoxal phosphate (PLP)-dependent enzymes catalyzes beta-replacement and beta-elimination reactions. This CD corresponds to aminocyclopropane-1-carboxylate deaminase (ACCD), tryptophan ...

    3. NM_003442.6 → NP_003433.3  zinc finger protein 143 isoform 1

      See identical proteins and their annotated locations for NP_003433.3

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) encodes the longest isoform (1).
      Source sequence(s)
      AK297214, AW162015, BC020219, BG825506
      Consensus CDS
      CCDS7799.2
      UniProtKB/Swiss-Prot
      A8K518, B4DLY5, E7ER34, O75559, P52747, Q8WUK9
      UniProtKB/TrEMBL
      E7EN86
      Related
      ENSP00000379847.2, ENST00000396602.7
      Conserved Domains (5) summary
      COG5048
      Location:264 → 322
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:239 → 261
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam13465
      Location:313 → 340
      zf-H2C2_2; Zinc-finger double domain
      pfam15909
      Location:299 → 414
      zf-C2H2_8; C2H2-type zinc ribbon
      cl00342
      Location:82 → 192
      Trp-synth-beta_II; Tryptophan synthase beta superfamily (fold type II); this family of pyridoxal phosphate (PLP)-dependent enzymes catalyzes beta-replacement and beta-elimination reactions. This CD corresponds to aminocyclopropane-1-carboxylate deaminase (ACCD), tryptophan ...

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000011.10 Reference GRCh38.p14 Primary Assembly

      Range
      9461012..9528524
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_047427553.1 → XP_047283509.1  zinc finger protein 143 isoform X5

      UniProtKB/Swiss-Prot
      A8K518, B4DLY5, E7ER34, O75559, P52747, Q8WUK9

    2. XM_047427557.1 → XP_047283513.1  zinc finger protein 143 isoform X6

    3. XM_047427552.1 → XP_047283508.1  zinc finger protein 143 isoform X5

      UniProtKB/Swiss-Prot
      A8K518, B4DLY5, E7ER34, O75559, P52747, Q8WUK9

    4. XM_011520349.3 → XP_011518651.1  zinc finger protein 143 isoform X5

      See identical proteins and their annotated locations for XP_011518651.1

      UniProtKB/Swiss-Prot
      A8K518, B4DLY5, E7ER34, O75559, P52747, Q8WUK9
      UniProtKB/TrEMBL
      E7EN86
      Conserved Domains (5) summary
      COG5048
      Location:264 → 322
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:239 → 261
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam13465
      Location:313 → 340
      zf-H2C2_2; Zinc-finger double domain
      pfam15909
      Location:299 → 414
      zf-C2H2_8; C2H2-type zinc ribbon
      cl00342
      Location:82 → 192
      Trp-synth-beta_II; Tryptophan synthase beta superfamily (fold type II); this family of pyridoxal phosphate (PLP)-dependent enzymes catalyzes beta-replacement and beta-elimination reactions. This CD corresponds to aminocyclopropane-1-carboxylate deaminase (ACCD), tryptophan ...

    5. XM_047427556.1 → XP_047283512.1  zinc finger protein 143 isoform X6

    6. XM_047427559.1 → XP_047283515.1  zinc finger protein 143 isoform X7

    7. XM_005253121.2 → XP_005253178.1  zinc finger protein 143 isoform X1

      UniProtKB/TrEMBL
      E7EN86
      Conserved Domains (5) summary
      COG5048
      Location:279 → 337
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:254 → 276
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam13465
      Location:328 → 355
      zf-H2C2_2; Zinc-finger double domain
      pfam15909
      Location:314 → 429
      zf-C2H2_8; C2H2-type zinc ribbon
      cl00342
      Location:97 → 207
      Trp-synth-beta_II; Tryptophan synthase beta superfamily (fold type II); this family of pyridoxal phosphate (PLP)-dependent enzymes catalyzes beta-replacement and beta-elimination reactions. This CD corresponds to aminocyclopropane-1-carboxylate deaminase (ACCD), tryptophan ...

    8. XM_005253122.2 → XP_005253179.1  zinc finger protein 143 isoform X2

      UniProtKB/TrEMBL
      E7EN86
      Conserved Domains (4) summary
      COG5048
      Location:278 → 336
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:253 → 275
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam13465
      Location:327 → 354
      zf-H2C2_2; Zinc-finger double domain
      pfam15909
      Location:313 → 428
      zf-C2H2_8; C2H2-type zinc ribbon

    9. XM_017018252.2 → XP_016873741.1  zinc finger protein 143 isoform X3

      UniProtKB/TrEMBL
      E7EN86

    10. XM_017018253.2 → XP_016873742.1  zinc finger protein 143 isoform X4

      UniProtKB/TrEMBL
      E7EN86

    11. XM_047427554.1 → XP_047283510.1  zinc finger protein 143 isoform X5

      UniProtKB/Swiss-Prot
      A8K518, B4DLY5, E7ER34, O75559, P52747, Q8WUK9

    12. XM_017018254.3 → XP_016873743.1  zinc finger protein 143 isoform X6

      UniProtKB/TrEMBL
      E7EN86
      Conserved Domains (4) summary
      COG5048
      Location:263 → 321
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:238 → 260
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam13465
      Location:312 → 339
      zf-H2C2_2; Zinc-finger double domain
      pfam15909
      Location:298 → 413
      zf-C2H2_8; C2H2-type zinc ribbon

    13. XM_047427560.1 → XP_047283516.1  zinc finger protein 143 isoform X7

    14. XM_047427555.1 → XP_047283511.1  zinc finger protein 143 isoform X5

      UniProtKB/Swiss-Prot
      A8K518, B4DLY5, E7ER34, O75559, P52747, Q8WUK9

    15. XM_017018255.2 → XP_016873744.1  zinc finger protein 143 isoform X6

      UniProtKB/TrEMBL
      E7EN86
      Conserved Domains (4) summary
      COG5048
      Location:263 → 321
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:238 → 260
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam13465
      Location:312 → 339
      zf-H2C2_2; Zinc-finger double domain
      pfam15909
      Location:298 → 413
      zf-C2H2_8; C2H2-type zinc ribbon

    16. XM_047427558.1 → XP_047283514.1  zinc finger protein 143 isoform X7

    17. XM_047427561.1 → XP_047283517.1  zinc finger protein 143 isoform X8

    18. XM_047427562.1 → XP_047283518.1  zinc finger protein 143 isoform X8

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060935.1 Alternate T2T-CHM13v2.0

      Range
      9546141..9612748
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_054369870.1 → XP_054225845.1  zinc finger protein 143 isoform X1

    2. XM_054369871.1 → XP_054225846.1  zinc finger protein 143 isoform X2

    3. XM_054369872.1 → XP_054225847.1  zinc finger protein 143 isoform X3

    4. XM_054369873.1 → XP_054225848.1  zinc finger protein 143 isoform X4

    5. XM_054369881.1 → XP_054225856.1  zinc finger protein 143 isoform X6

    6. XM_054369876.1 → XP_054225851.1  zinc finger protein 143 isoform X5

    7. XM_054369877.1 → XP_054225852.1  zinc finger protein 143 isoform X5

    8. XM_054369880.1 → XP_054225855.1  zinc finger protein 143 isoform X6

    9. XM_054369884.1 → XP_054225859.1  zinc finger protein 143 isoform X7

    10. XM_054369878.1 → XP_054225853.1  zinc finger protein 143 isoform X5

    11. XM_054369875.1 → XP_054225850.1  zinc finger protein 143 isoform X6

    12. XM_054369885.1 → XP_054225860.1  zinc finger protein 143 isoform X7

    13. XM_054369879.1 → XP_054225854.1  zinc finger protein 143 isoform X5

    14. XM_054369882.1 → XP_054225857.1  zinc finger protein 143 isoform X6

    15. XM_054369883.1 → XP_054225858.1  zinc finger protein 143 isoform X7

    16. XM_054369874.1 → XP_054225849.1  zinc finger protein 143 isoform X5

    17. XM_054369886.1 → XP_054225861.1  zinc finger protein 143 isoform X8

    18. XM_054369887.1 → XP_054225862.1  zinc finger protein 143 isoform X8

    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    P52747.2 GenPept UniProtKB/Swiss-Prot:P52747

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