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    Rps9 ribosomal protein S9 [ Mus musculus (house mouse) ]

    Gene ID: 76846, updated on 9-Sep-2018

    Summary

    Official Symbol
    Rps9provided by MGI
    Official Full Name
    ribosomal protein S9provided by MGI
    Primary source
    MGI:MGI:1924096
    See related
    Ensembl:ENSMUSG00000006333 Vega:OTTMUSG00000022990
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    AL022771; AL022885; 3010033P07Rik
    Expression
    Ubiquitous expression in CNS E11.5 (RPKM 388.6), liver E14 (RPKM 316.7) and 28 other tissues See more
    Orthologs

    Genomic context

    See Rps9 in Genome Data Viewer
    Location:
    7; 7 A1
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 7 NC_000073.6 (3703954..3706897)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 7 NC_000073.5 (3655643..3658499)

    Chromosome 7 - NC_000073.6Genomic Context describing neighboring genes Neighboring gene leukocyte receptor cluster (LRC) member 1 Neighboring gene transmembrane channel-like gene family 4 Neighboring gene membrane bound O-acyltransferase domain containing 7 Neighboring gene tRNA splicing endonuclease subunit 34 Neighboring gene paired Ig-like receptor B Neighboring gene paired-Ig-like receptor A1

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Pathways from BioSystems

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Clone Names

    • MGC4138

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    5.8S rRNA binding ISO
    Inferred from Sequence Orthology
    more info
     
    RNA binding IEA
    Inferred from Electronic Annotation
    more info
     
    rRNA binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    structural constituent of ribosome IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    translation regulator activity ISO
    Inferred from Sequence Orthology
    more info
     
    Process Evidence Code Pubs
    positive regulation of cell proliferation ISO
    Inferred from Sequence Orthology
    more info
     
    positive regulation of translational fidelity IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    translation ISO
    Inferred from Sequence Orthology
    more info
     
    Component Evidence Code Pubs
    cytoplasm ISO
    Inferred from Sequence Orthology
    more info
     
    cytosolic small ribosomal subunit IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    cytosolic small ribosomal subunit ISO
    Inferred from Sequence Orthology
    more info
     
    intracellular IEA
    Inferred from Electronic Annotation
    more info
     
    nucleolus ISO
    Inferred from Sequence Orthology
    more info
     
    ribonucleoprotein complex ISO
    Inferred from Sequence Orthology
    more info
     
    ribosome IEA
    Inferred from Electronic Annotation
    more info
     
    small ribosomal subunit IEA
    Inferred from Electronic Annotation
    more info
     
    synapse EXP
    Inferred from Experiment
    more info
    PubMed 
    synapse IDA
    Inferred from Direct Assay
    more info
    PubMed 

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_029767.2NP_084043.1  40S ribosomal protein S9

      See identical proteins and their annotated locations for NP_084043.1

      Status: PROVISIONAL

      Source sequence(s)
      AK050591
      Consensus CDS
      CCDS20726.1
      UniProtKB/Swiss-Prot
      Q6ZWN5
      Related
      ENSMUSP00000006496.8, OTTMUSP00000026495, ENSMUST00000006496.14, OTTMUST00000055345
      Conserved Domains (1) summary
      PTZ00155
      Location:11177
      PTZ00155; 40S ribosomal protein S9; Provisional

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000073.6 Reference GRCm38.p4 C57BL/6J

      Range
      3703954..3706897
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006540420.3XP_006540483.1  40S ribosomal protein S9 isoform X1

      Related
      ENSMUSP00000104263.1, OTTMUSP00000026496, ENSMUST00000108623.7, OTTMUST00000055346
      Conserved Domains (2) summary
      PTZ00155
      Location:11136
      PTZ00155; 40S ribosomal protein S9; Provisional
      pfam01479
      Location:108135
      S4; S4 domain

    RNA

    1. XR_391108.3 RNA Sequence

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