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    Rpl18a ribosomal protein L18A [ Mus musculus (house mouse) ]

    Gene ID: 76808, updated on 9-Sep-2018

    Summary

    Official Symbol
    Rpl18aprovided by MGI
    Official Full Name
    ribosomal protein L18Aprovided by MGI
    Primary source
    MGI:MGI:1924058
    See related
    Ensembl:ENSMUSG00000045128 Vega:OTTMUSG00000061602
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    2510019J09Rik
    Expression
    Ubiquitous expression in ovary adult (RPKM 831.5), spleen adult (RPKM 769.9) and 28 other tissues See more
    Orthologs

    Genomic context

    See Rpl18a in Genome Data Viewer
    Location:
    8; 8 B3.3
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 8 NC_000074.6 (70894722..70897443, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 8 NC_000074.5 (73418621..73421342, complement)

    Chromosome 8 - NC_000074.6Genomic Context describing neighboring genes Neighboring gene coiled-coil domain containing 124 Neighboring gene solute carrier family 5 (sodium iodide symporter), member 5 Neighboring gene microRNA 7067 Neighboring gene small nucleolar RNA, H/ACA box 68 Neighboring gene microtubule-associated protein 1S Neighboring gene microRNA 1969

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Pathways from BioSystems

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    structural constituent of ribosome IEA
    Inferred from Electronic Annotation
    more info
     
    Process Evidence Code Pubs
    cytoplasmic translation ISO
    Inferred from Sequence Orthology
    more info
     
    translation IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    cytosolic large ribosomal subunit IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    cytosolic large ribosomal subunit ISO
    Inferred from Sequence Orthology
    more info
     
    polysomal ribosome ISO
    Inferred from Sequence Orthology
    more info
     
    postsynaptic density EXP
    Inferred from Experiment
    more info
    PubMed 
    postsynaptic density IDA
    Inferred from Direct Assay
    more info
    PubMed 
    postsynaptic density ISO
    Inferred from Sequence Orthology
    more info
     
    ribosome ISO
    Inferred from Sequence Orthology
    more info
     
    synapse ISO
    Inferred from Sequence Orthology
    more info
     

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_029751.4NP_084027.1  60S ribosomal protein L18a

      See identical proteins and their annotated locations for NP_084027.1

      Status: VALIDATED

      Source sequence(s)
      AK161942, CJ042325
      Consensus CDS
      CCDS22386.1
      UniProtKB/Swiss-Prot
      P62717
      Related
      ENSMUSP00000058368.8, OTTMUSP00000077911, ENSMUST00000054220.9, OTTMUST00000150276
      Conserved Domains (1) summary
      COG2157
      Location:69153
      RPL20A; Ribosomal protein L20A (L18A) [Translation, ribosomal structure and biogenesis]

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000074.6 Reference GRCm38.p4 C57BL/6J

      Range
      70894722..70897443 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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