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    Efr3a EFR3 homolog A [ Mus musculus (house mouse) ]

    Gene ID: 76740, updated on 23-Jun-2021

    Summary

    Official Symbol
    Efr3aprovided by MGI
    Official Full Name
    EFR3 homolog Aprovided by MGI
    Primary source
    MGI:MGI:1923990
    See related
    Ensembl:ENSMUSG00000015002
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    C76891; BB071175; mKIAA0143; A130089M23Rik; C920006C10Rik; D030063F01Rik
    Expression
    Ubiquitous expression in cerebellum adult (RPKM 23.6), cortex adult (RPKM 17.9) and 28 other tissues See more
    Orthologs
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    Genomic context

    See Efr3a in Genome Data Viewer
    Location:
    15; 15 D1
    Exon count:
    23
    Annotation release Status Assembly Chr Location
    109 current GRCm39 (GCF_000001635.27) 15 NC_000081.7 (65658852..65745661)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 15 NC_000081.6 (65787020..65873812)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 15 NC_000081.5 (65618603..65705374)

    Chromosome 15 - NC_000081.7Genomic Context describing neighboring genes Neighboring gene predicted gene 7814 Neighboring gene predicted gene, 23907 Neighboring gene predicted gene, 41339 Neighboring gene predicted gene, 41338 Neighboring gene otoconin 90 Neighboring gene C protein (AA 1-159) Neighboring gene HERV-H LTR-associating 1

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Gene trapped (1) 
    • Targeted (2)  1 citation
    • Endonuclease-mediated (1) 

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Clone Names

    • KIAA0143

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables protein homodimerization activity ISO
    Inferred from Sequence Orthology
    more info
     
    Process Evidence Code Pubs
    acts_upstream_of_or_within cell-cell adhesion ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in protein localization to plasma membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    involved_in protein localization to plasma membrane ISO
    Inferred from Sequence Orthology
    more info
     
    Component Evidence Code Pubs
    located_in cornified envelope ISO
    Inferred from Sequence Orthology
    more info
     
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
     
    located_in cytosol ISO
    Inferred from Sequence Orthology
    more info
     
    located_in intracellular anatomical structure IDA
    Inferred from Direct Assay
    more info
    PubMed 
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
     
    is_active_in plasma membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    located_in plasma membrane IDA
    Inferred from Direct Assay
    more info
    PubMed 
    located_in plasma membrane ISO
    Inferred from Sequence Orthology
    more info
     

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001356582.1NP_001343511.1  protein EFR3 homolog A isoform 2

      Status: VALIDATED

      Source sequence(s)
      AC091276
    2. NM_133766.4NP_598527.2  protein EFR3 homolog A isoform 1

      See identical proteins and their annotated locations for NP_598527.2

      Status: VALIDATED

      Source sequence(s)
      AC091276
      Consensus CDS
      CCDS27507.1
      UniProtKB/Swiss-Prot
      Q8BG67
      Related
      ENSMUSP00000015146.10, ENSMUST00000015146.16

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000081.7 Reference GRCm39 C57BL/6J

      Range
      65658852..65745661
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_036159625.1XP_036015518.1  protein EFR3 homolog A isoform X1

    2. XM_006521530.3XP_006521593.1  protein EFR3 homolog A isoform X1

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