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    Ift46 intraflagellar transport 46 [ Mus musculus (house mouse) ]

    Gene ID: 76568, updated on 16-Oct-2021

    Summary

    Official Symbol
    Ift46provided by MGI
    Official Full Name
    intraflagellar transport 46provided by MGI
    Primary source
    MGI:MGI:1923818
    See related
    Ensembl:ENSMUSG00000002031
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    R75047; c11orf2; AA408110; AI663846; 1500035H01Rik
    Expression
    Ubiquitous expression in testis adult (RPKM 16.0), CNS E14 (RPKM 11.2) and 28 other tissues See more
    Orthologs
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    Genomic context

    See Ift46 in Genome Data Viewer
    Location:
    9; 9 A5.2
    Exon count:
    15
    Annotation release Status Assembly Chr Location
    109 current GRCm39 (GCF_000001635.27) 9 NC_000075.7 (44683074..44704011)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 9 NC_000075.6 (44770456..44792714)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 9 NC_000075.5 (44581092..44600797)

    Chromosome 9 - NC_000075.7Genomic Context describing neighboring genes Neighboring gene pleckstrin homology like domain, family B, member 1 Neighboring gene predicted gene, 24166 Neighboring gene archain 1 Neighboring gene transmembrane protein 25 Neighboring gene tetratricopeptide repeat domain 36 Neighboring gene lysine (K)-specific methyltransferase 2A Neighboring gene predicted gene, 39326

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)

    Pathways from PubChem

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    Component Evidence Code Pubs
    located_in cell projection IEA
    Inferred from Electronic Annotation
    more info
     
    is_active_in centrosome IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    located_in centrosome IDA
    Inferred from Direct Assay
    more info
    PubMed 
    located_in ciliary base ISO
    Inferred from Sequence Orthology
    more info
    PubMed 
    located_in ciliary membrane ISO
    Inferred from Sequence Orthology
    more info
    PubMed 
    located_in cilium IDA
    Inferred from Direct Assay
    more info
    PubMed 
    located_in cilium TAS
    Traceable Author Statement
    more info
     
    located_in cytoplasm ISO
    Inferred from Sequence Orthology
    more info
     
    located_in cytoskeleton IEA
    Inferred from Electronic Annotation
    more info
     
    part_of intraciliary transport particle B IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    part_of intraciliary transport particle B IDA
    Inferred from Direct Assay
    more info
    PubMed 
    is_active_in motile cilium IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    located_in motile cilium IDA
    Inferred from Direct Assay
    more info
    PubMed 
    located_in motile cilium ISO
    Inferred from Sequence Orthology
    more info
    PubMed 

    General protein information

    Preferred Names
    intraflagellar transport protein 46 homolog
    Names
    intraflagellar transport 46 homolog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_023831.3NP_076320.2  intraflagellar transport protein 46 homolog

      See identical proteins and their annotated locations for NP_076320.2

      Status: PROVISIONAL

      Source sequence(s)
      AK032880
      Consensus CDS
      CCDS23119.1
      UniProtKB/Swiss-Prot
      Q9DB07
      Related
      ENSMUSP00000159011.2, ENSMUST00000239014.2
      Conserved Domains (1) summary
      pfam12317
      Location:62264
      IFT46_B_C; Intraflagellar transport complex B protein 46 C terminal

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000075.7 Reference GRCm39 C57BL/6J

      Range
      44683074..44704011
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006510671.5XP_006510734.1  intraflagellar transport protein 46 homolog isoform X1

      See identical proteins and their annotated locations for XP_006510734.1

      UniProtKB/Swiss-Prot
      Q9DB07
      Conserved Domains (1) summary
      pfam12317
      Location:62264
      IFT46_B_C; Intraflagellar transport complex B protein 46 C terminal
    2. XM_006510672.5XP_006510735.1  intraflagellar transport protein 46 homolog isoform X2

      Related
      ENSMUSP00000149271.3, ENSMUST00000214854.3
      Conserved Domains (1) summary
      pfam12317
      Location:62222
      IFT46_B_C; Intraflagellar transport complex B protein 46 C terminal
    3. XM_036155404.1XP_036011297.1  intraflagellar transport protein 46 homolog isoform X1

      Related
      ENSMUSP00000113845.2, ENSMUST00000118186.2
      Conserved Domains (1) summary
      pfam12317
      Location:62264
      IFT46_B_C; Intraflagellar transport complex B protein 46 C terminal

    RNA

    1. XR_001779069.3 RNA Sequence

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