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    Ccdc6 coiled-coil domain containing 6 [ Mus musculus (house mouse) ]

    Gene ID: 76551, updated on 21-Sep-2021

    Summary

    Official Symbol
    Ccdc6provided by MGI
    Official Full Name
    coiled-coil domain containing 6provided by MGI
    Primary source
    MGI:MGI:1923801
    See related
    Ensembl:ENSMUSG00000048701
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    AA536681; AA960498; AW061011; 2810012H18Rik
    Expression
    Ubiquitous expression in ovary adult (RPKM 13.7), bladder adult (RPKM 12.8) and 28 other tissues See more
    Orthologs
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    Genomic context

    See Ccdc6 in Genome Data Viewer
    Location:
    10; 10 B5.3
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    109 current GRCm39 (GCF_000001635.27) 10 NC_000076.7 (69932709..70029030)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 10 NC_000076.6 (70096878..70193200)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 10 NC_000076.5 (69559869..69655948)

    Chromosome 10 - NC_000076.7Genomic Context describing neighboring genes Neighboring gene ankyrin 3, epithelial Neighboring gene predicted gene, 33416 Neighboring gene predicted gene, 33361 Neighboring gene predicted gene, 51771 Neighboring gene uncharacterized LOC118567787 Neighboring gene myoregulin Neighboring gene solute carrier family 16 (monocarboxylic acid transporters), member 9

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Targeted (1)  1 citation
    • Endonuclease-mediated (1) 

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables SH3 domain binding IEA
    Inferred from Electronic Annotation
    more info
     
    enables identical protein binding ISO
    Inferred from Sequence Orthology
    more info
     
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
     
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
     
    located_in cytoskeleton IEA
    Inferred from Electronic Annotation
    more info
     
    located_in cytosol ISO
    Inferred from Sequence Orthology
    more info
     

    General protein information

    Preferred Names
    coiled-coil domain-containing protein 6

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001111121.1NP_001104591.1  coiled-coil domain-containing protein 6

      See identical proteins and their annotated locations for NP_001104591.1

      Status: VALIDATED

      Source sequence(s)
      AC132435
      Consensus CDS
      CCDS48591.1
      UniProtKB/Swiss-Prot
      D3YZP9
      Related
      ENSMUSP00000123374.2, ENSMUST00000147545.8
      Conserved Domains (1) summary
      pfam09755
      Location:45330
      DUF2046; Uncharacterized conserved protein H4 (DUF2046)

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000076.7 Reference GRCm39 C57BL/6J

      Range
      69932709..70029030
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006514276.4XP_006514339.1  coiled-coil domain-containing protein 6 isoform X1

      Conserved Domains (1) summary
      pfam09755
      Location:45330
      DUF2046; Uncharacterized conserved protein H4 (DUF2046)
    2. XM_006514277.4XP_006514340.1  coiled-coil domain-containing protein 6 isoform X2

      Conserved Domains (1) summary
      pfam09755
      Location:13248
      DUF2046; Uncharacterized conserved protein H4 (DUF2046)
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