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    Ccdc6 coiled-coil domain containing 6 [ Mus musculus (house mouse) ]

    Gene ID: 76551, updated on 31-Jan-2019

    Summary

    Official Symbol
    Ccdc6provided by MGI
    Official Full Name
    coiled-coil domain containing 6provided by MGI
    Primary source
    MGI:MGI:1923801
    See related
    Ensembl:ENSMUSG00000048701
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    AA536681; AA960498; AW061011; 2810012H18Rik
    Expression
    Ubiquitous expression in ovary adult (RPKM 13.7), bladder adult (RPKM 12.8) and 28 other tissues See more
    Orthologs

    Genomic context

    See Ccdc6 in Genome Data Viewer
    Location:
    10; 10 B5.3
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 10 NC_000076.6 (70096878..70193200)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 10 NC_000076.5 (69559869..69655948)

    Chromosome 10 - NC_000076.6Genomic Context describing neighboring genes Neighboring gene ankyrin 3, epithelial Neighboring gene predicted gene, 33416 Neighboring gene predicted gene, 33361 Neighboring gene myoregulin Neighboring gene solute carrier family 16 (monocarboxylic acid transporters), member 9

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (1) 

    Pathways from BioSystems

    • Pathways in cancer, organism-specific biosystem (from KEGG)
      Pathways in cancer, organism-specific biosystem
      Pathways in cancer
    • Thyroid cancer, organism-specific biosystem (from KEGG)
      Thyroid cancer, organism-specific biosystemThyroid cancer is the most common endocrine malignancy and accounts for the majority of endocrine cancer- related deaths each year. More than 95% of thyroid carcinomas are derived from follicular cel...
    • Thyroid cancer, conserved biosystem (from KEGG)
      Thyroid cancer, conserved biosystemThyroid cancer is the most common endocrine malignancy and accounts for the majority of endocrine cancer- related deaths each year. More than 95% of thyroid carcinomas are derived from follicular cel...

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    SH3 domain binding IEA
    Inferred from Electronic Annotation
    more info
     
    molecular_function ND
    No biological Data available
    more info
     
    Process Evidence Code Pubs
    biological_process ND
    No biological Data available
    more info
     
    Component Evidence Code Pubs
    cytoplasm IEA
    Inferred from Electronic Annotation
    more info
     
    cytoskeleton IEA
    Inferred from Electronic Annotation
    more info
     
    cytosol ISO
    Inferred from Sequence Orthology
    more info
     

    General protein information

    Preferred Names
    coiled-coil domain-containing protein 6

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001111121.1NP_001104591.1  coiled-coil domain-containing protein 6

      See identical proteins and their annotated locations for NP_001104591.1

      Status: VALIDATED

      Source sequence(s)
      AC132435
      Consensus CDS
      CCDS48591.1
      UniProtKB/Swiss-Prot
      D3YZP9
      Related
      ENSMUSP00000123374.1, ENSMUST00000147545.7
      Conserved Domains (1) summary
      pfam09755
      Location:45330
      DUF2046; Uncharacterized conserved protein H4 (DUF2046)

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000076.6 Reference GRCm38.p4 C57BL/6J

      Range
      70096878..70193200
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006514276.3XP_006514339.1  coiled-coil domain-containing protein 6 isoform X1

      Conserved Domains (2) summary
      pfam09755
      Location:45330
      DUF2046; Uncharacterized conserved protein H4 (DUF2046)
      cl00259
      Location:111200
      Sm_like; Sm and related proteins
    2. XM_006514277.2XP_006514340.1  coiled-coil domain-containing protein 6 isoform X2

      Conserved Domains (2) summary
      pfam09755
      Location:13248
      DUF2046; Uncharacterized conserved protein H4 (DUF2046)
      cl00259
      Location:29118
      Sm_like; Sm and related proteins
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