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    Glt8d1 glycosyltransferase 8 domain containing 1 [ Mus musculus (house mouse) ]

    Gene ID: 76485, updated on 9-Sep-2018

    Summary

    Official Symbol
    Glt8d1provided by MGI
    Official Full Name
    glycosyltransferase 8 domain containing 1provided by MGI
    Primary source
    MGI:MGI:1923735
    See related
    Ensembl:ENSMUSG00000021916
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    AI450005; 2410004H05Rik; 5430414N14Rik
    Summary
    This gene encodes a member of the glycosyltransferase family. The encoded protein is a type II transmembrane protein containing a glycosyltransferase 8 domain in the lumenal (C-terminal) portion. The specific function of this protein has not been determined. Two alternatively spliced variants encoding the same isoform have been described. [provided by RefSeq, Sep 2009]
    Expression
    Broad expression in testis adult (RPKM 75.2), limb E14.5 (RPKM 20.1) and 21 other tissues See more
    Orthologs

    Genomic context

    See Glt8d1 in Genome Data Viewer
    Location:
    14; 14 B
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 14 NC_000080.6 (31001347..31012441)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 14 NC_000080.5 (31814579..31825627)

    Chromosome 14 - NC_000080.6Genomic Context describing neighboring genes Neighboring gene predicted gene, 41121 Neighboring gene NIMA (never in mitosis gene a)-related expressed kinase 4 Neighboring gene signal peptidase complex subunit 1 homolog (S. cerevisiae) Neighboring gene small nucleolar RNA, C/D box 69 Neighboring gene guanine nucleotide binding protein-like 3 (nucleolar) Neighboring gene small nucleolar RNA, C/D box 19

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    transferase activity IEA
    Inferred from Electronic Annotation
    more info
     
    transferase activity, transferring glycosyl groups IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    Golgi apparatus IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    integral component of membrane IEA
    Inferred from Electronic Annotation
    more info
     
    membrane IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    glycosyltransferase 8 domain-containing protein 1
    NP_001159402.1
    NP_083902.2
    XP_006519732.2
    XP_006519735.1
    XP_006519736.1
    XP_006519737.1

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001165930.1NP_001159402.1  glycosyltransferase 8 domain-containing protein 1

      See identical proteins and their annotated locations for NP_001159402.1

      Status: REVIEWED

      Description
      Transcript Variant: This variant (2) differs in the 5' UTR compared to variant 1. Both variants 1 and 2 encode the same protein.
      Source sequence(s)
      AC154727, AK077388, CX209391
      Consensus CDS
      CCDS26904.1
      UniProtKB/Swiss-Prot
      Q6NSU3
      Related
      ENSMUSP00000129323.1, ENSMUST00000168584.8
      Conserved Domains (1) summary
      cd06429
      Location:66351
      GT8_like_1; GT8_like_1 represents a subfamily of GT8 with unknown function
    2. NM_029626.2NP_083902.2  glycosyltransferase 8 domain-containing protein 1

      See identical proteins and their annotated locations for NP_083902.2

      Status: REVIEWED

      Description
      Transcript Variant: This variant (1) represents the longer transcript. Both variants 1 and 2 encode the same protein.
      Source sequence(s)
      AC154727, AK010388, BC069873, CJ177766
      Consensus CDS
      CCDS26904.1
      UniProtKB/Swiss-Prot
      Q6NSU3
      Related
      ENSMUSP00000022476.7, ENSMUST00000022476.8
      Conserved Domains (1) summary
      cd06429
      Location:66351
      GT8_like_1; GT8_like_1 represents a subfamily of GT8 with unknown function

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000080.6 Reference GRCm38.p4 C57BL/6J

      Range
      31001347..31012441
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006519669.2XP_006519732.2  glycosyltransferase 8 domain-containing protein 1 isoform X1

      See identical proteins and their annotated locations for XP_006519732.2

      UniProtKB/Swiss-Prot
      Q6NSU3
      Conserved Domains (1) summary
      cd06429
      Location:66351
      GT8_like_1; GT8_like_1 represents a subfamily of GT8 with unknown function
    2. XM_006519672.3XP_006519735.1  glycosyltransferase 8 domain-containing protein 1 isoform X1

      See identical proteins and their annotated locations for XP_006519735.1

      UniProtKB/Swiss-Prot
      Q6NSU3
      Conserved Domains (1) summary
      cd06429
      Location:66351
      GT8_like_1; GT8_like_1 represents a subfamily of GT8 with unknown function
    3. XM_006519673.3XP_006519736.1  glycosyltransferase 8 domain-containing protein 1 isoform X1

      See identical proteins and their annotated locations for XP_006519736.1

      UniProtKB/Swiss-Prot
      Q6NSU3
      Conserved Domains (1) summary
      cd06429
      Location:66351
      GT8_like_1; GT8_like_1 represents a subfamily of GT8 with unknown function
    4. XM_006519674.2XP_006519737.1  glycosyltransferase 8 domain-containing protein 1 isoform X1

      See identical proteins and their annotated locations for XP_006519737.1

      UniProtKB/Swiss-Prot
      Q6NSU3
      Conserved Domains (1) summary
      cd06429
      Location:66351
      GT8_like_1; GT8_like_1 represents a subfamily of GT8 with unknown function
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