Format

Send to:

Choose Destination
    • Showing Current items.

    Med13l mediator complex subunit 13-like [ Mus musculus (house mouse) ]

    Gene ID: 76199, updated on 2-Oct-2018

    Summary

    Official Symbol
    Med13lprovided by MGI
    Official Full Name
    mediator complex subunit 13-likeprovided by MGI
    Primary source
    MGI:MGI:2670178
    See related
    Ensembl:ENSMUSG00000018076 Vega:OTTMUSG00000056228
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Thrap2; Trap240L; mKIAA1025; 2210413I17Rik; 6330591G05Rik; 9030618F05Rik
    Expression
    Ubiquitous expression in thymus adult (RPKM 10.1), spleen adult (RPKM 6.5) and 28 other tissues See more
    Orthologs

    Genomic context

    See Med13l in Genome Data Viewer
    Location:
    5; 5 F
    Exon count:
    32
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 5 NC_000071.6 (118560701..118765438)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 5 NC_000071.5 (119010728..119215447)

    Chromosome 5 - NC_000071.6Genomic Context describing neighboring genes Neighboring gene predicted gene, 46921 Neighboring gene predicted gene 15754 Neighboring gene predicted gene, 42015 Neighboring gene RIKEN cDNA 4930413E15 gene

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Targeted (1) 

    Pathways from BioSystems

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    transcription coregulator activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    Process Evidence Code Pubs
    regulation of transcription by RNA polymerase II IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    transcription by RNA polymerase II IC
    Inferred by Curator
    more info
    PubMed 
    Component Evidence Code Pubs
    mediator complex IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    mediator complex IDA
    Inferred from Direct Assay
    more info
    PubMed 
    nucleus IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    mediator of RNA polymerase II transcription subunit 13-like
    Names
    thyroid hormone receptor associated protein 2
    thyroid hormone receptor-associated protein complex 240 kDa component-like

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001347445.1NP_001334374.1  mediator of RNA polymerase II transcription subunit 13-like isoform 1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) represents the longer transcript and encodes the longer isoform (1).
      Source sequence(s)
      AC117585, AC129552
      Consensus CDS
      CCDS84948.1
      UniProtKB/TrEMBL
      A0A0J9YUA8
    2. NM_172424.4NP_766012.3  mediator of RNA polymerase II transcription subunit 13-like isoform 2

      See identical proteins and their annotated locations for NP_766012.3

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) uses an alternate in-frame splice junction compared to variant 1. The resulting isoform (2) has the same N- and C-termini but is shorter compared to isoform 1.
      Source sequence(s)
      AK018557, AK075850, AK142391, AY338464, BC072653, BQ748188
      Consensus CDS
      CCDS57375.1
      UniProtKB/Swiss-Prot
      Q6JPI3
      UniProtKB/TrEMBL
      E9QLJ3, Q6GQS5
      Related
      ENSMUSP00000098379.4, OTTMUSP00000072978, ENSMUST00000100816.7, OTTMUST00000138967
      Conserved Domains (2) summary
      pfam06333
      Location:16752194
      Med13_C; Mediator complex subunit 13 C-terminal
      pfam11597
      Location:16380
      Med13_N; Mediator complex subunit 13 N-terminal

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000071.6 Reference GRCm38.p4 C57BL/6J

      Range
      118560701..118765438
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006530496.3XP_006530559.1  mediator of RNA polymerase II transcription subunit 13-like isoform X1

      Related
      ENSMUSP00000144092.1, OTTMUSP00000072979, ENSMUST00000201010.1, OTTMUST00000138970
      Conserved Domains (2) summary
      pfam06333
      Location:16752203
      Med13_C; Mediator complex subunit 13 C-terminal
      pfam11597
      Location:16380
      Med13_N; Mediator complex subunit 13 N-terminal
    2. XM_011248248.2XP_011246550.1  mediator of RNA polymerase II transcription subunit 13-like isoform X2

      Conserved Domains (2) summary
      pfam06333
      Location:16742202
      Med13_C; Mediator complex subunit 13 C-terminal
      pfam11597
      Location:16380
      Med13_N; Mediator complex subunit 13 N-terminal
    3. XM_006530497.3XP_006530560.1  mediator of RNA polymerase II transcription subunit 13-like isoform X3

      Conserved Domains (2) summary
      pfam06333
      Location:15412069
      Med13_C; Mediator complex subunit 13 C-terminal
      pfam11597
      Location:1246
      Med13_N; Mediator complex subunit 13 N-terminal
    Support Center