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    Pcgf5 polycomb group ring finger 5 [ Mus musculus (house mouse) ]

    Gene ID: 76073, updated on 23-Jun-2021

    Summary

    Official Symbol
    Pcgf5provided by MGI
    Official Full Name
    polycomb group ring finger 5provided by MGI
    Primary source
    MGI:MGI:1923505
    See related
    Ensembl:ENSMUSG00000024805
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    AI324127; 0610009F02Rik; 1110054A01Rik; 5830406C17Rik; 5830443C21Rik; 9530023M17Rik
    Expression
    Ubiquitous expression in placenta adult (RPKM 8.9), heart adult (RPKM 3.9) and 26 other tissues See more
    Orthologs
    NEW
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    Try the new Transcript table

    Genomic context

    See Pcgf5 in Genome Data Viewer
    Location:
    19; 19 C2
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    109 current GRCm39 (GCF_000001635.27) 19 NC_000085.7 (36325729..36438370)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 19 NC_000085.6 (36348329..36460970)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 19 NC_000085.5 (36453557..36530694)

    Chromosome 19 - NC_000085.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 32027 Neighboring gene uncharacterized LOC115489009 Neighboring gene predicted gene, 46664 Neighboring gene nudix (nucleoside diphosphate linked moiety X)-type motif 9 pseudogene Neighboring gene IK cytokine pseudogene Neighboring gene predicted gene, 32143 Neighboring gene predicted gene, 41838

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)

    Pathways from PubChem

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
     
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    Component Evidence Code Pubs
    located_in Golgi apparatus ISO
    Inferred from Sequence Orthology
    more info
     
    part_of PRC1 complex IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    part_of PcG protein complex IDA
    Inferred from Direct Assay
    more info
    PubMed 
    part_of PcG protein complex ISO
    Inferred from Sequence Orthology
    more info
     
    colocalizes_with X chromosome IDA
    Inferred from Direct Assay
    more info
    PubMed 
    located_in centrosome ISO
    Inferred from Sequence Orthology
    more info
     
    located_in nucleoplasm ISO
    Inferred from Sequence Orthology
    more info
     
    located_in nucleus ISO
    Inferred from Sequence Orthology
    more info
     

    General protein information

    Preferred Names
    polycomb group RING finger protein 5
    Names
    RING finger protein 159

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001368690.1NP_001355619.1  polycomb group RING finger protein 5 isoform 1

      Status: VALIDATED

      Source sequence(s)
      AC117769
      Consensus CDS
      CCDS89384.1
      Conserved Domains (3) summary
      TIGR00599
      Location:8135
      rad18; DNA repair protein rad18
      cd16737
      Location:1657
      RING-HC_PCGF5; RING finger found in polycomb group RING finger protein 5 (PCGF5) and similar proteins
      cd17084
      Location:136256
      RAWUL_PCGF5; RING finger- and WD40-associated ubiquitin-like (RAWUL) domain found in polycomb group RING finger protein 5 (PCGF5) and similar proteins
    2. NM_001368691.1NP_001355620.1  polycomb group RING finger protein 5 isoform 1

      Status: VALIDATED

      Source sequence(s)
      AC117769
      Consensus CDS
      CCDS89384.1
      Related
      ENSMUSP00000153464.2, ENSMUST00000225411.2
      Conserved Domains (3) summary
      TIGR00599
      Location:8135
      rad18; DNA repair protein rad18
      cd16737
      Location:1657
      RING-HC_PCGF5; RING finger found in polycomb group RING finger protein 5 (PCGF5) and similar proteins
      cd17084
      Location:136256
      RAWUL_PCGF5; RING finger- and WD40-associated ubiquitin-like (RAWUL) domain found in polycomb group RING finger protein 5 (PCGF5) and similar proteins
    3. NM_001368692.1NP_001355621.1  polycomb group RING finger protein 5 isoform 2

      Status: VALIDATED

      Source sequence(s)
      AA472895, AC117769, AK002387, AK004240, CX224153
      Consensus CDS
      CCDS29772.1
      Related
      ENSMUSP00000153206.2, ENSMUST00000225920.2
      Conserved Domains (3) summary
      TIGR00599
      Location:8135
      rad18; DNA repair protein rad18
      cd16737
      Location:1657
      RING-HC_PCGF5; RING finger found in polycomb group RING finger protein 5 (PCGF5) and similar proteins
      cd17084
      Location:136236
      RAWUL_PCGF5; RING finger- and WD40-associated ubiquitin-like (RAWUL) domain found in polycomb group RING finger protein 5 (PCGF5) and similar proteins
    4. NM_001368693.1NP_001355622.1  polycomb group RING finger protein 5 isoform 2

      Status: VALIDATED

      Source sequence(s)
      AC117769
      Consensus CDS
      CCDS29772.1
      Related
      ENSMUSP00000058730.6, ENSMUST00000062389.6
      Conserved Domains (3) summary
      TIGR00599
      Location:8135
      rad18; DNA repair protein rad18
      cd16737
      Location:1657
      RING-HC_PCGF5; RING finger found in polycomb group RING finger protein 5 (PCGF5) and similar proteins
      cd17084
      Location:136236
      RAWUL_PCGF5; RING finger- and WD40-associated ubiquitin-like (RAWUL) domain found in polycomb group RING finger protein 5 (PCGF5) and similar proteins
    5. NM_029508.4NP_083784.1  polycomb group RING finger protein 5 isoform 2

      See identical proteins and their annotated locations for NP_083784.1

      Status: VALIDATED

      Source sequence(s)
      AC117769
      Consensus CDS
      CCDS29772.1
      UniProtKB/Swiss-Prot
      Q3UK78
      Related
      ENSMUSP00000071245.7, ENSMUST00000071267.14
      Conserved Domains (3) summary
      TIGR00599
      Location:8135
      rad18; DNA repair protein rad18
      cd16737
      Location:1657
      RING-HC_PCGF5; RING finger found in polycomb group RING finger protein 5 (PCGF5) and similar proteins
      cd17084
      Location:136236
      RAWUL_PCGF5; RING finger- and WD40-associated ubiquitin-like (RAWUL) domain found in polycomb group RING finger protein 5 (PCGF5) and similar proteins

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000085.7 Reference GRCm39 C57BL/6J

      Range
      36325729..36438370
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_036161722.1XP_036017615.1  polycomb group RING finger protein 5 isoform X2

      Conserved Domains (3) summary
      TIGR00599
      Location:8135
      rad18; DNA repair protein rad18
      cd16737
      Location:1657
      RING-HC_PCGF5; RING finger found in polycomb group RING finger protein 5 (PCGF5) and similar proteins
      cd17084
      Location:136236
      RAWUL_PCGF5; RING finger- and WD40-associated ubiquitin-like (RAWUL) domain found in polycomb group RING finger protein 5 (PCGF5) and similar proteins
    2. XM_011247392.4XP_011245694.1  polycomb group RING finger protein 5 isoform X1

      See identical proteins and their annotated locations for XP_011245694.1

      UniProtKB/Swiss-Prot
      Q3UK78
      Conserved Domains (3) summary
      TIGR00599
      Location:8135
      rad18; DNA repair protein rad18
      cd16737
      Location:1657
      RING-HC_PCGF5; RING finger found in polycomb group RING finger protein 5 (PCGF5) and similar proteins
      cd17084
      Location:136256
      RAWUL_PCGF5; RING finger- and WD40-associated ubiquitin-like (RAWUL) domain found in polycomb group RING finger protein 5 (PCGF5) and similar proteins
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