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    Gon4l gon-4-like (C.elegans) [ Mus musculus (house mouse) ]

    Gene ID: 76022, updated on 23-Jun-2021

    Summary

    Official Symbol
    Gon4lprovided by MGI
    Official Full Name
    gon-4-like (C.elegans)provided by MGI
    Primary source
    MGI:MGI:1917579
    See related
    Ensembl:ENSMUSG00000054199
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    AA387005; 1500041I23Rik; 2610100B20Rik; 3632445O20Rik; 5430404N14Rik
    Expression
    Ubiquitous expression in CNS E11.5 (RPKM 18.1), CNS E14 (RPKM 12.6) and 28 other tissues See more
    Orthologs
    NEW
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    Try the new Transcript table

    Genomic context

    See Gon4l in Genome Data Viewer
    Location:
    3; 3 F1
    Exon count:
    33
    Annotation release Status Assembly Chr Location
    109 current GRCm39 (GCF_000001635.27) 3 NC_000069.7 (88742517..88817406)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 3 NC_000069.6 (88835207..88910099)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 3 NC_000069.5 (88639150..88714021)

    Chromosome 3 - NC_000069.7Genomic Context describing neighboring genes Neighboring gene gon-4-like pseudogene Neighboring gene synaptotagmin XI Neighboring gene RIKEN cDNA 1500004A13 gene Neighboring gene predicted gene, 23054 Neighboring gene predicted gene, 40091 Neighboring gene predicted gene, 53242 Neighboring gene nuclear encoded rRNA 5S 197 Neighboring gene misato 1, mitochondrial distribution and morphology regulator Neighboring gene death associated protein 3 Neighboring gene ASH1 like histone lysine methyltransferase Neighboring gene predicted gene, 26465

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    enables transcription coregulator activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    enables transcription corepressor activity IDA
    Inferred from Direct Assay
    more info
    PubMed 
    Component Evidence Code Pubs
    part_of Ino80 complex ISO
    Inferred from Sequence Orthology
    more info
     
    located_in fibrillar center ISO
    Inferred from Sequence Orthology
    more info
     
    located_in nuclear body ISO
    Inferred from Sequence Orthology
    more info
     
    located_in nucleolus ISO
    Inferred from Sequence Orthology
    more info
     
    located_in nucleoplasm ISO
    Inferred from Sequence Orthology
    more info
     
    is_active_in nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    located_in nucleus IDA
    Inferred from Direct Assay
    more info
    PubMed 
    located_in nucleus ISO
    Inferred from Sequence Orthology
    more info
     

    General protein information

    Preferred Names
    GON-4-like protein
    Names
    GON-4 homolog

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001242372.1NP_001229301.1  GON-4-like protein isoform 1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) represents the longer transcript and encodes the longer isoform (1).
      Source sequence(s)
      AC127377, AK147575, BC108377
      UniProtKB/TrEMBL
      Q32NZ8
      Conserved Domains (2) summary
      cd12202
      Location:21612226
      CASP8AP2; Caspase 8-associated protein 2 myb-like domain
      pfam02671
      Location:16711716
      PAH; Paired amphipathic helix repeat
    2. NM_027389.3NP_081665.2  GON-4-like protein isoform 2

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) lacks an alternate in-frame exon compared to variant 1. The resulting isoform (2) has the same N- and C-termini but is shorter compared to isoform 1.
      Source sequence(s)
      AC127377, AK147575, BC108377
      Consensus CDS
      CCDS50954.1
      UniProtKB/TrEMBL
      E9Q507, Q32NZ8
      Related
      ENSMUSP00000103122.3, ENSMUST00000107498.9
      Conserved Domains (2) summary
      cd12202
      Location:21442209
      CASP8AP2; Caspase 8-associated protein 2 myb-like domain
      pfam02671
      Location:16541699
      PAH; Paired amphipathic helix repeat

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000069.7 Reference GRCm39 C57BL/6J

      Range
      88742517..88817406
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_017319796.3XP_017175285.1  GON-4-like protein isoform X3

      Conserved Domains (3) summary
      cd12202
      Location:21542219
      CASP8AP2; Caspase 8-associated protein 2 myb-like domain
      PHA03247
      Location:9841250
      PHA03247; large tegument protein UL36; Provisional
      pfam02671
      Location:16641709
      PAH; Paired amphipathic helix repeat
    2. XM_036163384.1XP_036019277.1  GON-4-like protein isoform X1

      Conserved Domains (3) summary
      cd12202
      Location:21632228
      CASP8AP2; Caspase 8-associated protein 2 myb-like domain
      PHA03247
      Location:9921258
      PHA03247; large tegument protein UL36; Provisional
      pfam02671
      Location:16721717
      PAH; Paired amphipathic helix repeat
    3. XM_036163387.1XP_036019280.1  GON-4-like protein isoform X4

      Conserved Domains (3) summary
      cd12202
      Location:21542219
      CASP8AP2; Caspase 8-associated protein 2 myb-like domain
      PHA03247
      Location:9831249
      PHA03247; large tegument protein UL36; Provisional
      pfam02671
      Location:16631708
      PAH; Paired amphipathic helix repeat
    4. XM_036163385.1XP_036019278.1  GON-4-like protein isoform X2

      Conserved Domains (3) summary
      cd12202
      Location:21622227
      CASP8AP2; Caspase 8-associated protein 2 myb-like domain
      PHA03247
      Location:9921258
      PHA03247; large tegument protein UL36; Provisional
      pfam02671
      Location:16721717
      PAH; Paired amphipathic helix repeat
    5. XM_036163386.1XP_036019279.1  GON-4-like protein isoform X3

      Related
      ENSMUSP00000088461.6, ENSMUST00000090942.6
      Conserved Domains (3) summary
      cd12202
      Location:21542219
      CASP8AP2; Caspase 8-associated protein 2 myb-like domain
      PHA03247
      Location:9841250
      PHA03247; large tegument protein UL36; Provisional
      pfam02671
      Location:16641709
      PAH; Paired amphipathic helix repeat
    6. XM_036163388.1XP_036019281.1  GON-4-like protein isoform X5

      Conserved Domains (3) summary
      cd12202
      Location:21532218
      CASP8AP2; Caspase 8-associated protein 2 myb-like domain
      PHA03247
      Location:9831249
      PHA03247; large tegument protein UL36; Provisional
      pfam02671
      Location:16631708
      PAH; Paired amphipathic helix repeat

    RNA

    1. XR_004941411.1 RNA Sequence

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