Format

Send to:

Choose Destination
    • Showing Current items.

    Rab11fip1 RAB11 family interacting protein 1 (class I) [ Mus musculus (house mouse) ]

    Gene ID: 75767, updated on 23-Jun-2021

    Summary

    Official Symbol
    Rab11fip1provided by MGI
    Official Full Name
    RAB11 family interacting protein 1 (class I)provided by MGI
    Primary source
    MGI:MGI:1923017
    See related
    Ensembl:ENSMUSG00000031488
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Rcp; 2010200K21Rik; 4833414G05Rik
    Expression
    Broad expression in lung adult (RPKM 12.6), colon adult (RPKM 11.6) and 20 other tissues See more
    Orthologs
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    See Rab11fip1 in Genome Data Viewer
    Location:
    8; 8 A2
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    109 current GRCm39 (GCF_000001635.27) 8 NC_000074.7 (27628801..27664707, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 8 NC_000074.6 (27138773..27174646, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 8 NC_000074.5 (28249245..28285118, complement)

    Chromosome 8 - NC_000074.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 39151 Neighboring gene adhesion G protein-coupled receptor A2 Neighboring gene VISTA enhancer mm136 Neighboring gene BRF2, RNA polymerase III transcription initiation factor 50kDa subunit Neighboring gene RIKEN cDNA 4933416M07 gene Neighboring gene glutamic-oxaloacetic transaminase 1-like 1 Neighboring gene adrenergic receptor, beta 3

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Targeted (2)  1 citation
    • Endonuclease-mediated (1) 

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Homology

    Clone Names

    • MGC159103

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables small GTPase binding IEA
    Inferred from Electronic Annotation
    more info
     
    Process Evidence Code Pubs
    involved_in negative regulation of adiponectin secretion ISO
    Inferred from Sequence Orthology
    more info
     
    acts_upstream_of_or_within protein transport IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in regulated exocytosis IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    Component Evidence Code Pubs
    located_in cytoplasmic vesicle IEA
    Inferred from Electronic Annotation
    more info
     
    located_in cytosol ISO
    Inferred from Sequence Orthology
    more info
     
    located_in endosome IEA
    Inferred from Electronic Annotation
    more info
     
    is_active_in intracellular membrane-bounded organelle IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    located_in intracellular membrane-bounded organelle ISO
    Inferred from Sequence Orthology
    more info
     
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    rab11 family-interacting protein 1
    Names
    Rab coupling protein
    rab-coupling protein
    rab11-FIP1

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001080813.2NP_001074282.1  rab11 family-interacting protein 1 isoform 1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) represents the longer transcript and encodes the longer isoform (1).
      Source sequence(s)
      AC119917
      Consensus CDS
      CCDS40311.1
      UniProtKB/TrEMBL
      E9Q8L9
      Related
      ENSMUSP00000058042.7, ENSMUST00000054212.7
      Conserved Domains (2) summary
      cd08682
      Location:20149
      C2_Rab11-FIP_classI; C2 domain found in Rab11-family interacting proteins (FIP) class I
      pfam09457
      Location:11091156
      RBD-FIP; FIP domain
    2. NM_029423.2NP_083699.2  rab11 family-interacting protein 1 isoform 2

      See identical proteins and their annotated locations for NP_083699.2

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) lacks an alternate in-frame exon in the coding region, compared to variant 1. The resulting isoform (2) lacks an internal segment, compared to isoform 1.
      Source sequence(s)
      AC119917, BB619642, BC132094
      Consensus CDS
      CCDS52534.1
      UniProtKB/Swiss-Prot
      Q9D620
      Related
      ENSMUSP00000033878.7, ENSMUST00000033878.14
      Conserved Domains (2) summary
      cd08682
      Location:20149
      C2_Rab11-FIP_classI; C2 domain found in Rab11-family interacting proteins (FIP) class I
      pfam09457
      Location:588635
      RBD-FIP; FIP domain

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000074.7 Reference GRCm39 C57BL/6J

      Range
      27628801..27664707 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_036154355.1XP_036010248.1  rab11 family-interacting protein 1 isoform X2

      Conserved Domains (1) summary
      PHA03247
      Location:339501
      PHA03247; large tegument protein UL36; Provisional
    2. XM_036154353.1XP_036010246.1  rab11 family-interacting protein 1 isoform X1

      Related
      ENSMUSP00000147543.2, ENSMUST00000209377.2
      Conserved Domains (2) summary
      cd08682
      Location:20149
      C2_Rab11-FIP_classI; C2 domain found in Rab11-family interacting proteins (FIP) class I
      PHA03247
      Location:489651
      PHA03247; large tegument protein UL36; Provisional
    3. XM_036154356.1XP_036010249.1  rab11 family-interacting protein 1 isoform X3

      Conserved Domains (1) summary
      cd08682
      Location:20149
      C2_Rab11-FIP_classI; C2 domain found in Rab11-family interacting proteins (FIP) class I
    Support Center