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    Klf17 Kruppel-like factor 17 [ Mus musculus (house mouse) ]

    Gene ID: 75753, updated on 23-Jun-2021

    Summary

    Official Symbol
    Klf17provided by MGI
    Official Full Name
    Kruppel-like factor 17provided by MGI
    Primary source
    MGI:MGI:2181068
    See related
    Ensembl:ENSMUSG00000048626
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Gzf; Zfp39; C85123; Zfp393; AA420409; AU043468; D4Ertd561; D4Ertd561e; 7420700M05Rik
    Expression
    Restricted expression toward testis adult (RPKM 10.0) See more
    Orthologs
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    Genomic context

    See Klf17 in Genome Data Viewer
    Location:
    4 D1; 4 53.46 cM
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    109 current GRCm39 (GCF_000001635.27) 4 NC_000070.7 (117613856..117622863, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 4 NC_000070.6 (117756659..117765666, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 4 NC_000070.5 (117429264..117438271, complement)

    Chromosome 4 - NC_000070.7Genomic Context describing neighboring genes Neighboring gene zinc finger protein 352 pseudogene Neighboring gene ras homolog gene family, member A pseudogene Neighboring gene predicted gene, 40232 Neighboring gene peptidylprolyl isomerase A pseudogene 4_1138.1

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Targeted (2) 

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    Krueppel-like factor 17
    Names
    germ cell specific zinc finger protein
    zinc finger protein 393

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_029416.2NP_083692.2  Krueppel-like factor 17

      See identical proteins and their annotated locations for NP_083692.2

      Status: VALIDATED

      Source sequence(s)
      AK139827, CJ074269, CJ205589
      Consensus CDS
      CCDS18537.1
      UniProtKB/Swiss-Prot
      Q8CFA7
      Related
      ENSMUSP00000052316.6, ENSMUST00000062747.6
      Conserved Domains (4) summary
      COG5048
      Location:22317
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:261280
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam00096
      Location:316338
      zf-C2H2; Zinc finger, C2H2 type
      pfam13465
      Location:302325
      zf-H2C2_2; Zinc-finger double domain

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000070.7 Reference GRCm39 C57BL/6J

      Range
      117613856..117622863 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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