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    Phf14 PHD finger protein 14 [ Mus musculus (house mouse) ]

    Gene ID: 75725, updated on 28-Oct-2018

    Summary

    Official Symbol
    Phf14provided by MGI
    Official Full Name
    PHD finger protein 14provided by MGI
    Primary source
    MGI:MGI:1923539
    See related
    Ensembl:ENSMUSG00000029629 Vega:OTTMUSG00000017311
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    AA623952; AV297001; mKIAA0783; 1110001C23Rik; 4932409F11Rik; 5730446A07Rik
    Expression
    Broad expression in CNS E11.5 (RPKM 8.4), CNS E14 (RPKM 6.2) and 19 other tissues See more
    Orthologs

    Genomic context

    See Phf14 in Genome Data Viewer
    Location:
    6; 6 A1
    Exon count:
    26
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 6 NC_000072.6 (11907698..12100156)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 6 NC_000072.5 (11875881..12031198)

    Chromosome 6 - NC_000072.6Genomic Context describing neighboring genes Neighboring gene EST AA545190 Neighboring gene Ndufa4, mitochondrial complex associated Neighboring gene mitochondrial ribosomal protein L32 pseudogene Neighboring gene predicted gene, 32222 Neighboring gene predicted gene, 35961

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Clone Names

    • KIAA0783

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    metal ion binding IEA
    Inferred from Electronic Annotation
    more info
     
    molecular_function ND
    No biological Data available
    more info
     
    Component Evidence Code Pubs
    nucleus IDA
    Inferred from Direct Assay
    more info
    PubMed 

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001168382.2NP_001161854.1  PHD finger protein 14 isoform 1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) encodes the longest isoform (1).
      Source sequence(s)
      AC153640, AC153641
      Consensus CDS
      CCDS51720.1
      UniProtKB/Swiss-Prot
      Q9D4H9
      Related
      ENSMUSP00000111173.2, OTTMUSP00000073606, ENSMUST00000115511.8
      Conserved Domains (4) summary
      cd15561
      Location:314370
      PHD1_PHF14; PHD finger 1 found in PHD finger protein 14 (PHF14) and similar proteins
      cd15562
      Location:720769
      PHD2_PHF14; PHD finger 2 found in PHD finger protein 14 (PHF14) and similar proteins
      cd15563
      Location:863911
      PHD3_PHF14; PHD finger 3 found in PHD finger protein 14 (PHF14) and similar proteins
      cd15674
      Location:378491
      ePHD_PHF14; Extended PHD finger found in PHD finger protein 14 (PHF14) and similar proteins
    2. NM_001362122.1NP_001349051.1  PHD finger protein 14 isoform 3

      Status: VALIDATED

      Source sequence(s)
      AC153640, AC153641
      Conserved Domains (4) summary
      cd15561
      Location:3692
      PHD1_PHF14; PHD finger 1 found in PHD finger protein 14 (PHF14) and similar proteins
      cd15562
      Location:442491
      PHD2_PHF14; PHD finger 2 found in PHD finger protein 14 (PHF14) and similar proteins
      cd15563
      Location:585633
      PHD3_PHF14; PHD finger 3 found in PHD finger protein 14 (PHF14) and similar proteins
      cd15674
      Location:100213
      ePHD_PHF14; Extended PHD finger found in PHD finger protein 14 (PHF14) and similar proteins
    3. NM_001362123.1NP_001349052.1  PHD finger protein 14 isoform 4

      Status: VALIDATED

      Source sequence(s)
      AC153640, AC153641
      Conserved Domains (3) summary
      cd15561
      Location:3692
      PHD1_PHF14; PHD finger 1 found in PHD finger protein 14 (PHF14) and similar proteins
      cd15562
      Location:442491
      PHD2_PHF14; PHD finger 2 found in PHD finger protein 14 (PHF14) and similar proteins
      cd15674
      Location:100213
      ePHD_PHF14; Extended PHD finger found in PHD finger protein 14 (PHF14) and similar proteins
    4. NM_029404.4NP_083680.2  PHD finger protein 14 isoform 2

      See identical proteins and their annotated locations for NP_083680.2

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) lacks two 3' exons, but has an alternate 3' exon, as compared to variant 1. The resulting isoform (2) is shorter and has a different C-terminus, as compared to isoform 1.
      Source sequence(s)
      AC153640, AC153641
      Consensus CDS
      CCDS39428.1
      UniProtKB/Swiss-Prot
      Q9D4H9
      UniProtKB/TrEMBL
      G5E8S0
      Related
      ENSMUSP00000111172.1, OTTMUSP00000018904, ENSMUST00000115510.7
      Conserved Domains (3) summary
      cd15561
      Location:314370
      PHD1_PHF14; PHD finger 1 found in PHD finger protein 14 (PHF14) and similar proteins
      cd15562
      Location:720769
      PHD2_PHF14; PHD finger 2 found in PHD finger protein 14 (PHF14) and similar proteins
      cd15674
      Location:378491
      ePHD_PHF14; Extended PHD finger found in PHD finger protein 14 (PHF14) and similar proteins

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000072.6 Reference GRCm38.p4 C57BL/6J

      Range
      11907698..12100156
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006505197.3XP_006505260.1  PHD finger protein 14 isoform X2

      See identical proteins and their annotated locations for XP_006505260.1

      Conserved Domains (4) summary
      cd15561
      Location:314370
      PHD1_PHF14; PHD finger 1 found in PHD finger protein 14 (PHF14) and similar proteins
      cd15562
      Location:720769
      PHD2_PHF14; PHD finger 2 found in PHD finger protein 14 (PHF14) and similar proteins
      cd15563
      Location:863911
      PHD3_PHF14; PHD finger 3 found in PHD finger protein 14 (PHF14) and similar proteins
      cd15674
      Location:378491
      ePHD_PHF14; Extended PHD finger found in PHD finger protein 14 (PHF14) and similar proteins
    2. XM_006505202.3XP_006505265.1  PHD finger protein 14 isoform X7

      See identical proteins and their annotated locations for XP_006505265.1

      Conserved Domains (4) summary
      cd15561
      Location:3692
      PHD1_PHF14; PHD finger 1 found in PHD finger protein 14 (PHF14) and similar proteins
      cd15562
      Location:442491
      PHD2_PHF14; PHD finger 2 found in PHD finger protein 14 (PHF14) and similar proteins
      cd15563
      Location:585633
      PHD3_PHF14; PHD finger 3 found in PHD finger protein 14 (PHF14) and similar proteins
      cd15674
      Location:100213
      ePHD_PHF14; Extended PHD finger found in PHD finger protein 14 (PHF14) and similar proteins
    3. XM_017321819.1XP_017177308.1  PHD finger protein 14 isoform X8

      Conserved Domains (4) summary
      cd15561
      Location:3692
      PHD1_PHF14; PHD finger 1 found in PHD finger protein 14 (PHF14) and similar proteins
      cd15562
      Location:442491
      PHD2_PHF14; PHD finger 2 found in PHD finger protein 14 (PHF14) and similar proteins
      cd15563
      Location:585633
      PHD3_PHF14; PHD finger 3 found in PHD finger protein 14 (PHF14) and similar proteins
      cd15674
      Location:100213
      ePHD_PHF14; Extended PHD finger found in PHD finger protein 14 (PHF14) and similar proteins
    4. XM_017321821.1XP_017177310.1  PHD finger protein 14 isoform X9

      Conserved Domains (3) summary
      cd15561
      Location:3692
      PHD1_PHF14; PHD finger 1 found in PHD finger protein 14 (PHF14) and similar proteins
      cd15562
      Location:442491
      PHD2_PHF14; PHD finger 2 found in PHD finger protein 14 (PHF14) and similar proteins
      cd15674
      Location:100213
      ePHD_PHF14; Extended PHD finger found in PHD finger protein 14 (PHF14) and similar proteins
    5. XM_006505196.3XP_006505259.1  PHD finger protein 14 isoform X1

      See identical proteins and their annotated locations for XP_006505259.1

      Conserved Domains (4) summary
      cd15561
      Location:314370
      PHD1_PHF14; PHD finger 1 found in PHD finger protein 14 (PHF14) and similar proteins
      cd15562
      Location:720769
      PHD2_PHF14; PHD finger 2 found in PHD finger protein 14 (PHF14) and similar proteins
      cd15563
      Location:863911
      PHD3_PHF14; PHD finger 3 found in PHD finger protein 14 (PHF14) and similar proteins
      cd15674
      Location:378491
      ePHD_PHF14; Extended PHD finger found in PHD finger protein 14 (PHF14) and similar proteins
    6. XM_011241085.2XP_011239387.1  PHD finger protein 14 isoform X3

      Conserved Domains (4) summary
      cd15561
      Location:314370
      PHD1_PHF14; PHD finger 1 found in PHD finger protein 14 (PHF14) and similar proteins
      cd15562
      Location:720769
      PHD2_PHF14; PHD finger 2 found in PHD finger protein 14 (PHF14) and similar proteins
      cd15563
      Location:863911
      PHD3_PHF14; PHD finger 3 found in PHD finger protein 14 (PHF14) and similar proteins
      cd15674
      Location:378491
      ePHD_PHF14; Extended PHD finger found in PHD finger protein 14 (PHF14) and similar proteins
    7. XM_006505198.3XP_006505261.1  PHD finger protein 14 isoform X4

      Conserved Domains (3) summary
      cd15561
      Location:314370
      PHD1_PHF14; PHD finger 1 found in PHD finger protein 14 (PHF14) and similar proteins
      cd15562
      Location:720769
      PHD2_PHF14; PHD finger 2 found in PHD finger protein 14 (PHF14) and similar proteins
      cd15674
      Location:378491
      ePHD_PHF14; Extended PHD finger found in PHD finger protein 14 (PHF14) and similar proteins
    8. XM_006505199.3XP_006505262.1  PHD finger protein 14 isoform X5

      Related
      ENSMUSP00000088126.4, OTTMUSP00000018905, ENSMUST00000090632.10, OTTMUST00000042042
      Conserved Domains (3) summary
      cd15561
      Location:314370
      PHD1_PHF14; PHD finger 1 found in PHD finger protein 14 (PHF14) and similar proteins
      cd15562
      Location:720769
      PHD2_PHF14; PHD finger 2 found in PHD finger protein 14 (PHF14) and similar proteins
      cd15674
      Location:378491
      ePHD_PHF14; Extended PHD finger found in PHD finger protein 14 (PHF14) and similar proteins
    9. XM_006505200.3XP_006505263.1  PHD finger protein 14 isoform X6

      Conserved Domains (3) summary
      cd15561
      Location:314370
      PHD1_PHF14; PHD finger 1 found in PHD finger protein 14 (PHF14) and similar proteins
      cd15562
      Location:720769
      PHD2_PHF14; PHD finger 2 found in PHD finger protein 14 (PHF14) and similar proteins
      cd15674
      Location:378491
      ePHD_PHF14; Extended PHD finger found in PHD finger protein 14 (PHF14) and similar proteins
    10. XM_006505201.3XP_006505264.1  PHD finger protein 14 isoform X7

      See identical proteins and their annotated locations for XP_006505264.1

      Conserved Domains (4) summary
      cd15561
      Location:3692
      PHD1_PHF14; PHD finger 1 found in PHD finger protein 14 (PHF14) and similar proteins
      cd15562
      Location:442491
      PHD2_PHF14; PHD finger 2 found in PHD finger protein 14 (PHF14) and similar proteins
      cd15563
      Location:585633
      PHD3_PHF14; PHD finger 3 found in PHD finger protein 14 (PHF14) and similar proteins
      cd15674
      Location:100213
      ePHD_PHF14; Extended PHD finger found in PHD finger protein 14 (PHF14) and similar proteins
    11. XM_017321820.1XP_017177309.1  PHD finger protein 14 isoform X8

      Conserved Domains (4) summary
      cd15561
      Location:3692
      PHD1_PHF14; PHD finger 1 found in PHD finger protein 14 (PHF14) and similar proteins
      cd15562
      Location:442491
      PHD2_PHF14; PHD finger 2 found in PHD finger protein 14 (PHF14) and similar proteins
      cd15563
      Location:585633
      PHD3_PHF14; PHD finger 3 found in PHD finger protein 14 (PHF14) and similar proteins
      cd15674
      Location:100213
      ePHD_PHF14; Extended PHD finger found in PHD finger protein 14 (PHF14) and similar proteins

    RNA

    1. XR_001785183.1 RNA Sequence

    2. XR_377293.3 RNA Sequence

    3. XR_377294.3 RNA Sequence

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