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    Bicdl1 BICD family like cargo adaptor 1 [ Mus musculus (house mouse) ]

    Gene ID: 75665, updated on 31-Jan-2019

    Summary

    Official Symbol
    Bicdl1provided by MGI
    Official Full Name
    BICD family like cargo adaptor 1provided by MGI
    Primary source
    MGI:MGI:1922915
    See related
    Ensembl:ENSMUSG00000041609
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Ccdc64; BICDR-1; 2210403N09Rik
    Expression
    Ubiquitous expression in thymus adult (RPKM 26.8), CNS E18 (RPKM 20.2) and 24 other tissues See more
    Orthologs

    Genomic context

    See Bicdl1 in Genome Data Viewer
    Location:
    5; 5 F
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 5 NC_000071.6 (115648174..115731660, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 5 NC_000071.5 (116099295..116181568, complement)

    Chromosome 5 - NC_000071.6Genomic Context describing neighboring genes Neighboring gene RIKEN cDNA 1110006O24 gene Neighboring gene RAB35, member RAS oncogene family Neighboring gene microRNA 7030 Neighboring gene ribosomal protein L29 Neighboring gene citron Neighboring gene predicted gene, 42008

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Targeted (2) 

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Homology

    Clone Names

    • MGC143541

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    Rab GTPase binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    Rab GTPase binding IDA
    Inferred from Direct Assay
    more info
    PubMed 
    dynactin binding IDA
    Inferred from Direct Assay
    more info
    PubMed 
    protein binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    Process Evidence Code Pubs
    Golgi to secretory granule transport IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    Golgi to secretory granule transport IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    nervous system development IEA
    Inferred from Electronic Annotation
    more info
     
    neuron projection development IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    vesicle transport along microtubule IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    Component Evidence Code Pubs
    cell IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    centrosome IDA
    Inferred from Direct Assay
    more info
    PubMed 
    cytoplasm IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    cytoplasm IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    cytoskeleton IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    BICD family-like cargo adapter 1; bicaudal D-related protein 1
    Names
    BICD-related protein 1
    coiled-coil domain containing 64
    coiled-coil domain-containing protein 64A

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001080808.2NP_001074277.1  BICD family-like cargo adapter 1

      See identical proteins and their annotated locations for NP_001074277.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) represents the protein-coding transcript.
      Source sequence(s)
      AC139562, GU973876
      Consensus CDS
      CCDS39230.1
      UniProtKB/Swiss-Prot
      A0JNT9
      Related
      ENSMUSP00000053547.6, ENSMUST00000055408.12
      Conserved Domains (1) summary
      cl25732
      Location:101331
      SMC_N; RecF/RecN/SMC N terminal domain

    RNA

    1. NR_151598.1 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) contains three alternate exons compared to variant 1. This variant is represented as non-coding because the use of the 5'-most expected translational start codon renders the transcript a candidate for nonsense-mediated mRNA decay (NMD).
      Source sequence(s)
      AC139562, AC159539
    2. NR_151599.1 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (3) contains three alternate exons compared to variant 1. This variant is represented as non-coding because the use of the 5'-most expected translational start codon renders the transcript a candidate for nonsense-mediated mRNA decay (NMD).
      Source sequence(s)
      AC139562, AC159539
    3. NR_151600.1 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (4) differs in the 5' end and contains and alternate internal exon compared to variant 1. This variant is represented as non-coding because the use of the 5'-most expected translational start codon renders the transcript a candidate for nonsense-mediated mRNA decay (NMD).
      Source sequence(s)
      AC159539
    4. NR_151601.1 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (5) differs in the 5' end and contains and alternate internal exon compared to variant 1. This variant is represented as non-coding because the use of the 5'-most expected translational start codon renders the transcript a candidate for nonsense-mediated mRNA decay (NMD).
      Source sequence(s)
      AC159539
    5. NR_151602.1 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (6) differs in the 5' end compared to variant 1. This variant is represented as non-coding because the use of the 5'-most expected translational start codon renders the transcript a candidate for nonsense-mediated mRNA decay (NMD).
      Source sequence(s)
      AC159539
    6. NR_151603.1 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (7) differs in the 5' end compared to variant 1. This variant is represented as non-coding because the use of the 5'-most expected translational start codon renders the transcript a candidate for nonsense-mediated mRNA decay (NMD).
      Source sequence(s)
      AC159539

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000071.6 Reference GRCm38.p4 C57BL/6J

      Range
      115648174..115731660 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006530489.2XP_006530552.1  bicaudal D-related protein 1 isoform X3

      Conserved Domains (3) summary
      pfam14818
      Location:140188
      DUF4482; Domain of unknown function (DUF4482)
      pfam14988
      Location:123303
      DUF4515; Domain of unknown function (DUF4515)
      cl23720
      Location:167282
      RILP-like; Rab interacting lysosomal protein-like 1 and 2 (Rilpl1 and Rilpl2)
    2. XM_006530490.3XP_006530553.1  bicaudal D-related protein 1 isoform X1

      Conserved Domains (2) summary
      pfam14988
      Location:123303
      DUF4515; Domain of unknown function (DUF4515)
      cl23720
      Location:167282
      RILP-like; Rab interacting lysosomal protein-like 1 and 2 (Rilpl1 and Rilpl2)
    3. XM_006530487.2XP_006530550.1  bicaudal D-related protein 1 isoform X2

      Conserved Domains (2) summary
      pfam01665
      Location:102242
      Rota_NSP3; Rotavirus non-structural protein NSP3
      pfam14988
      Location:123299
      DUF4515; Domain of unknown function (DUF4515)

    RNA

    1. XR_001784753.1 RNA Sequence

    2. XR_387579.2 RNA Sequence

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