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    Smim15 small integral membrane protein 15 [ Mus musculus (house mouse) ]

    Gene ID: 75616, updated on 31-Jan-2019

    Summary

    Official Symbol
    Smim15provided by MGI
    Official Full Name
    small integral membrane protein 15provided by MGI
    Primary source
    MGI:MGI:1922866
    See related
    Ensembl:ENSMUSG00000071180
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    2810008M24Rik
    Expression
    Broad expression in bladder adult (RPKM 21.8), CNS E11.5 (RPKM 14.4) and 23 other tissues See more
    Orthologs

    Genomic context

    See Smim15 in Genome Data Viewer
    Location:
    13; 13 D2.1
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 13 NC_000079.6 (108044474..108049175)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 13 NC_000079.5 (108834668..108839340)

    Chromosome 13 - NC_000079.6Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC102634835 Neighboring gene predicted gene, 41055 Neighboring gene NADH:ubiquinone oxidoreductase complex assembly factor 2 Neighboring gene predicted gene, 32268 Neighboring gene excision repaiross-complementing rodent repair deficiency, complementation group 8

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    molecular_function ND
    No biological Data available
    more info
     
    Process Evidence Code Pubs
    biological_process ND
    No biological Data available
    more info
     
    Component Evidence Code Pubs
    cellular_component ND
    No biological Data available
    more info
     
    integral component of membrane IEA
    Inferred from Electronic Annotation
    more info
     
    membrane IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    small integral membrane protein 15
    Names
    UPF0542 protein C5orf43 homolog

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001048250.2NP_001041715.1  small integral membrane protein 15

      See identical proteins and their annotated locations for NP_001041715.1

      Status: PROVISIONAL

      Source sequence(s)
      AK139507
      Consensus CDS
      CCDS36777.1
      UniProtKB/Swiss-Prot
      Q3UTD9
      Related
      ENSMUSP00000093110.4, ENSMUST00000095458.5
      Conserved Domains (1) summary
      pfam15086
      Location:471
      UPF0542; Uncharacterized protein family UPF0542

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000079.6 Reference GRCm38.p4 C57BL/6J

      Range
      108044474..108049175
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006517781.1XP_006517844.1  small integral membrane protein 15 isoform X1

      See identical proteins and their annotated locations for XP_006517844.1

      UniProtKB/Swiss-Prot
      Q3UTD9
      Related
      ENSMUSP00000153340.1, ENSMUST00000226042.1
      Conserved Domains (1) summary
      pfam15086
      Location:471
      UPF0542; Uncharacterized protein family UPF0542
    2. XM_006517780.1XP_006517843.1  small integral membrane protein 15 isoform X1

      See identical proteins and their annotated locations for XP_006517843.1

      UniProtKB/Swiss-Prot
      Q3UTD9
      Related
      ENSMUSP00000153282.1, ENSMUST00000225972.1
      Conserved Domains (1) summary
      pfam15086
      Location:471
      UPF0542; Uncharacterized protein family UPF0542
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