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    Sgf29 SAGA complex associated factor 29 [ Mus musculus (house mouse) ]

    Gene ID: 75565, updated on 31-Jan-2019

    Summary

    Official Symbol
    Sgf29provided by MGI
    Official Full Name
    SAGA complex associated factor 29provided by MGI
    Primary source
    MGI:MGI:1922815
    See related
    Ensembl:ENSMUSG00000030714
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Ccdc101; 1700023O11Rik; 9530025I05Rik
    Expression
    Broad expression in testis adult (RPKM 127.2), colon adult (RPKM 18.3) and 23 other tissues See more
    Orthologs

    Genomic context

    See Sgf29 in Genome Data Viewer
    Location:
    7; 7 F3
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 7 NC_000073.6 (126649298..126672779)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 7 NC_000073.5 (133792823..133816293)

    Chromosome 7 - NC_000073.6Genomic Context describing neighboring genes Neighboring gene predicted gene, 39086 Neighboring gene predicted gene, 39087 Neighboring gene nuclear protein transcription regulator 1 Neighboring gene sulfotransferase family 1A, phenol-preferring, member 1 Neighboring gene sulfotransferase family 1A, phenol-preferring, member 1 pseudogene Neighboring gene SLX1 structure-specific endonuclease subunit homolog B (S. cerevisiae)

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Targeted (1) 

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    RNA polymerase II transcription regulator recruiting activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    enzyme binding ISO
    Inferred from Sequence Orthology
    more info
     
    methylated histone binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    methylated histone binding ISO
    Inferred from Sequence Orthology
    more info
     
    protein N-terminus binding ISO
    Inferred from Sequence Orthology
    more info
     
    Process Evidence Code Pubs
    chromatin organization IEA
    Inferred from Electronic Annotation
    more info
     
    histone H3 acetylation IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    histone H3 acetylation ISO
    Inferred from Sequence Orthology
    more info
     
    histone acetylation ISO
    Inferred from Sequence Orthology
    more info
     
    Component Evidence Code Pubs
    Ada2/Gcn5/Ada3 transcription activator complex IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    Ada2/Gcn5/Ada3 transcription activator complex IDA
    Inferred from Direct Assay
    more info
    PubMed 
    Ada2/Gcn5/Ada3 transcription activator complex ISO
    Inferred from Sequence Orthology
    more info
     
    SAGA complex IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    SAGA-type complex ISO
    Inferred from Sequence Orthology
    more info
     
    nucleus ISO
    Inferred from Sequence Orthology
    more info
     

    General protein information

    Preferred Names
    SAGA-associated factor 29
    Names
    SAGA-associated factor 29 homolog
    coiled-coil domain containing 101
    coiled-coil domain-containing protein 101

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_029339.3NP_083615.3  SAGA-associated factor 29

      See identical proteins and their annotated locations for NP_083615.3

      Status: VALIDATED

      Source sequence(s)
      AK006287, AK139102, BE685896
      Consensus CDS
      CCDS21837.1
      UniProtKB/Swiss-Prot
      Q9DA08
      Related
      ENSMUSP00000032956.8, ENSMUST00000032956.9
      Conserved Domains (1) summary
      pfam07039
      Location:158288
      DUF1325; SGF29 tudor-like domain

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000073.6 Reference GRCm38.p4 C57BL/6J

      Range
      126649298..126672779
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_017312365.1XP_017167854.1  SAGA-associated factor 29 isoform X1

      UniProtKB/Swiss-Prot
      Q9DA08
      Conserved Domains (1) summary
      pfam07039
      Location:158288
      DUF1325; SGF29 tudor-like domain
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