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    Arl5a ADP-ribosylation factor-like 5A [ Mus musculus (house mouse) ]

    Gene ID: 75423, updated on 5-Feb-2019

    Summary

    Official Symbol
    Arl5aprovided by MGI
    Official Full Name
    ADP-ribosylation factor-like 5Aprovided by MGI
    Primary source
    MGI:MGI:1922673
    See related
    Ensembl:ENSMUSG00000036093
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Arl5; T25534; AA408731; AW610751; 2410015N24Rik; 2810410P22Rik
    Expression
    Ubiquitous expression in CNS E11.5 (RPKM 6.4), CNS E18 (RPKM 6.4) and 27 other tissues See more
    Orthologs

    Genomic context

    See Arl5a in Genome Data Viewer
    Location:
    2; 2 C1.1
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 2 NC_000068.7 (52397949..52424874, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 2 NC_000068.6 (52253471..52280394, complement)

    Chromosome 2 - NC_000068.7Genomic Context describing neighboring genes Neighboring gene predicted gene 13521 Neighboring gene predicted gene 13522 Neighboring gene calcium channel, voltage-dependent, beta 4 subunit Neighboring gene biogenesis of lysosomal organelles complex-1, subunit 2, pseudogene Neighboring gene predicted gene, 46740

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (1) 

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    GTP binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    nucleotide binding IEA
    Inferred from Electronic Annotation
    more info
     
    Process Evidence Code Pubs
    intracellular protein transport IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    protein localization to Golgi membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    protein localization to Golgi membrane ISO
    Inferred from Sequence Orthology
    more info
     
    vesicle-mediated transport IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    Component Evidence Code Pubs
    cytoplasm IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    trans-Golgi network IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 

    General protein information

    Preferred Names
    ADP-ribosylation factor-like protein 5A
    Names
    ADP-ribosylation factor-like 5

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_182994.2NP_892039.1  ADP-ribosylation factor-like protein 5A

      See identical proteins and their annotated locations for NP_892039.1

      Status: PROVISIONAL

      Source sequence(s)
      AL845467
      Consensus CDS
      CCDS16033.1
      UniProtKB/Swiss-Prot
      Q80ZU0
      UniProtKB/TrEMBL
      Q498A0
      Related
      ENSMUSP00000041756.7, ENSMUST00000036541.7
      Conserved Domains (2) summary
      cd04153
      Location:3175
      Arl5_Arl8; Arf-like 5 (Arl5) and 8 (Arl8) GTPases
      pfam00071
      Location:18164
      Ras; Ras family

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000068.7 Reference GRCm38.p4 C57BL/6J

      Range
      52397949..52424874 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_011239204.2XP_011237506.1  ADP-ribosylation factor-like protein 5A isoform X1

      Conserved Domains (1) summary
      cl21455
      Location:1138
      P-loop_NTPase; P-loop containing Nucleoside Triphosphate Hydrolases
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