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    Pelp1 proline, glutamic acid and leucine rich protein 1 [ Mus musculus (house mouse) ]

    Gene ID: 75273, updated on 2-Oct-2018

    Summary

    Official Symbol
    Pelp1provided by MGI
    Official Full Name
    proline, glutamic acid and leucine rich protein 1provided by MGI
    Primary source
    MGI:MGI:1922523
    See related
    Ensembl:ENSMUSG00000018921 Vega:OTTMUSG00000006046
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    MNAR; 4930563C04Rik
    Expression
    Ubiquitous expression in testis adult (RPKM 16.4), ovary adult (RPKM 15.2) and 28 other tissues See more
    Orthologs

    Genomic context

    See Pelp1 in Genome Data Viewer
    Location:
    11; 11 B3
    Exon count:
    17
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 11 NC_000077.6 (70392881..70410031, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 11 NC_000077.5 (70206383..70223533, complement)

    Chromosome 11 - NC_000077.6Genomic Context describing neighboring genes Neighboring gene arachidonate lipoxygenase, epidermal Neighboring gene arachidonate 15-lipoxygenase Neighboring gene FGFR1 oncogene partner 2 pseudogene Neighboring gene NADH dehydrogenase (ubiquinone) 1 beta subcomplex 8 pseudogene Neighboring gene arrestin, beta 2 Neighboring gene microRNA 7115

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Targeted (1) 

    Pathways from BioSystems

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    chromatin binding ISO
    Inferred from Sequence Orthology
    more info
     
    protein binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    transcription factor binding ISO
    Inferred from Sequence Orthology
    more info
     
    Process Evidence Code Pubs
    cellular response to estrogen stimulus ISO
    Inferred from Sequence Orthology
    more info
     
    positive regulation of transcription by RNA polymerase II ISO
    Inferred from Sequence Orthology
    more info
     
    Component Evidence Code Pubs
    MLL1 complex ISO
    Inferred from Sequence Orthology
    more info
     
    cytoplasm IEA
    Inferred from Electronic Annotation
    more info
     
    nucleolus ISO
    Inferred from Sequence Orthology
    more info
     
    nucleus ISO
    Inferred from Sequence Orthology
    more info
     
    transcriptionally active chromatin ISO
    Inferred from Sequence Orthology
    more info
     

    General protein information

    Preferred Names
    proline-, glutamic acid- and leucine-rich protein 1
    Names
    modulator of non-genomic activity of estrogen receptor

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_029231.4NP_083507.3  proline-, glutamic acid- and leucine-rich protein 1

      See identical proteins and their annotated locations for NP_083507.3

      Status: VALIDATED

      Source sequence(s)
      BC090620, BY767633
      Consensus CDS
      CCDS24945.1
      UniProtKB/Swiss-Prot
      Q9DBD5
      UniProtKB/TrEMBL
      A0A158SIT8
      Related
      ENSMUSP00000019065.3, OTTMUSP00000006313, ENSMUST00000019065.9, OTTMUST00000013612
      Conserved Domains (2) summary
      pfam08166
      Location:424475
      NUC202; NUC202 domain
      pfam08167
      Location:83232
      RIX1; rRNA processing/ribosome biogenesis

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000077.6 Reference GRCm38.p4 C57BL/6J

      Range
      70392881..70410031 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Reference GRCm38.p4 NOD/MrkTac

    Genomic

    1. NT_187026.1 Reference GRCm38.p4 NOD/MrkTac

      Range
      497325..514474 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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