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    Sap25 sin3 associated polypeptide [ Mus musculus (house mouse) ]

    Gene ID: 751865, updated on 2-Oct-2018

    Summary

    Official Symbol
    Sap25provided by MGI
    Official Full Name
    sin3 associated polypeptideprovided by MGI
    Primary source
    MGI:MGI:3802945
    See related
    Ensembl:ENSMUSG00000079165 Vega:OTTMUSG00000040074
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Expression
    Broad expression in thymus adult (RPKM 123.8), spleen adult (RPKM 98.3) and 24 other tissues See more
    Orthologs

    Genomic context

    See Sap25 in Genome Data Viewer
    Location:
    5 G2; 5
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 5 NC_000071.6 (137641473..137642902)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 5 NC_000071.5 (138082701..138084130)

    Chromosome 5 - NC_000071.6Genomic Context describing neighboring genes Neighboring gene F-box protein 24 Neighboring gene cytochrome b-c1 complex subunit 7-like Neighboring gene predicted gene 20605 Neighboring gene leucine-rich repeats and calponin homology (CH) domain containing 4 Neighboring gene insulin receptor substrate 3 Neighboring gene ArfGAP with FG repeats 2

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    General gene information

    Markers

    Readthrough Gm20605

    Readthrough gene: Gm20605, Included gene: Lrch4

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    protein binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    Process Evidence Code Pubs
    biological_process ND
    No biological Data available
    more info
     
    regulation of transcription, DNA-templated IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    cellular_component ND
    No biological Data available
    more info
     
    cytoplasm IEA
    Inferred from Electronic Annotation
    more info
     
    nucleus IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    histone deacetylase complex subunit SAP25
    Names
    25 kDa Sin3-associated polypeptide
    mSin3A-binding protein
    sin3 corepressor complex subunit SAP25
    sin3A-binding protein, SAP25

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001081962.2NP_001075431.2  histone deacetylase complex subunit SAP25

      Status: VALIDATED

      Source sequence(s)
      AM275337, BX517344, CB058897
      Consensus CDS
      CCDS39336.2
      UniProtKB/Swiss-Prot
      Q1EHW4
      UniProtKB/TrEMBL
      E9Q529
      Related
      ENSMUSP00000127076.2, OTTMUSP00000058223, ENSMUST00000166099.2, OTTMUST00000104097
      Conserved Domains (1) summary
      pfam15476
      Location:76258
      SAP25; Histone deacetylase complex subunit SAP25

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000071.6 Reference GRCm38.p4 C57BL/6J

      Range
      137641473..137642902
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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