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    4930432K21Rik RIKEN cDNA 4930432K21 gene [ Mus musculus (house mouse) ]

    Gene ID: 74666, updated on 31-Jan-2019

    Summary

    Official Symbol
    4930432K21Rikprovided by MGI
    Official Full Name
    RIKEN cDNA 4930432K21 geneprovided by MGI
    Primary source
    MGI:MGI:1921916
    See related
    Ensembl:ENSMUSG00000008129
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Expression
    Biased expression in testis adult (RPKM 23.7) and ovary adult (RPKM 2.1) See more
    Orthologs

    Genomic context

    See 4930432K21Rik in Genome Data Viewer
    Location:
    8; 8 C2
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 8 NC_000074.6 (84147947..84172597)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 8 NC_000074.5 (86671937..86696496)

    Chromosome 8 - NC_000074.6Genomic Context describing neighboring genes Neighboring gene DDB1 and CUL4 associated factor 15 Neighboring gene predicted gene, 39210 Neighboring gene podocan-like 1 Neighboring gene coiled-coil and C2 domain containing 1A Neighboring gene nanos C2HC-type zinc finger 3 Neighboring gene microRNA 181d

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (1) 

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    protein binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    Process Evidence Code Pubs
    biological_process ND
    No biological Data available
    more info
     
    Component Evidence Code Pubs
    cellular_component ND
    No biological Data available
    more info
     

    General protein information

    Preferred Names
    uncharacterized protein C19orf57 homolog

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001163752.1NP_001157224.1  uncharacterized protein C19orf57 homolog isoform 2

      See identical proteins and their annotated locations for NP_001157224.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) lacks an alternate in-frame exon in the 5' coding region, compared to variant 1. This results in a shorter protein (isoform 2), compared to isoform 1.
      Source sequence(s)
      AC159266, AK015293, BQ560290, BY296159
      Consensus CDS
      CCDS52617.1
      UniProtKB/Swiss-Prot
      Q6DIA7
      UniProtKB/TrEMBL
      A0A0R4J144
      Related
      ENSMUSP00000091067.4, ENSMUST00000093375.4
      Conserved Domains (1) summary
      pfam15710
      Location:1565
      DUF4671; Domain of unknown function (DUF4671)
    2. NM_029045.2NP_083321.2  uncharacterized protein C19orf57 homolog isoform 1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) represents the longer transcript and encodes the longer isoform (1).
      Source sequence(s)
      AC159266, AK015293, BC075658, BQ560290, BY296159
      Consensus CDS
      CCDS52616.1
      UniProtKB/Swiss-Prot
      Q6DIA7
      UniProtKB/TrEMBL
      E9QNR8
      Related
      ENSMUSP00000113651.1, ENSMUST00000118856.7
      Conserved Domains (1) summary
      pfam15710
      Location:1600
      DUF4671; Domain of unknown function (DUF4671)

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000074.6 Reference GRCm38.p4 C57BL/6J

      Range
      84147947..84172597
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006531445.3XP_006531508.1  uncharacterized protein C19orf57 homolog isoform X1

      See identical proteins and their annotated locations for XP_006531508.1

      Conserved Domains (1) summary
      pfam15710
      Location:4570
      DUF4671; Domain of unknown function (DUF4671)
    2. XM_006531446.3XP_006531509.1  uncharacterized protein C19orf57 homolog isoform X1

      See identical proteins and their annotated locations for XP_006531509.1

      Conserved Domains (1) summary
      pfam15710
      Location:4570
      DUF4671; Domain of unknown function (DUF4671)
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