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    Tent5c terminal nucleotidyltransferase 5C [ Mus musculus (house mouse) ]

    Gene ID: 74645, updated on 23-Jun-2021

    Summary

    Official Symbol
    Tent5cprovided by MGI
    Official Full Name
    terminal nucleotidyltransferase 5Cprovided by MGI
    Primary source
    MGI:MGI:1921895
    See related
    Ensembl:ENSMUSG00000044468
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Fam46; Fam46c; AI449797; 4930431B09Rik
    Expression
    Biased expression in testis adult (RPKM 107.5), liver E14.5 (RPKM 33.4) and 3 other tissues See more
    Orthologs
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    Genomic context

    See Tent5c in Genome Data Viewer
    Location:
    3; 3 F2.2
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    109 current GRCm39 (GCF_000001635.27) 3 NC_000069.7 (100375373..100396508, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 3 NC_000069.6 (100468057..100489192, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 3 NC_000069.5 (100275459..100293115, complement)

    Chromosome 3 - NC_000069.7Genomic Context describing neighboring genes Neighboring gene RIKEN cDNA 4930406D18 gene Neighboring gene predicted gene, 38530 Neighboring gene predicted gene, 40106 Neighboring gene predicted gene 12474 Neighboring gene predicted gene, 54212

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Targeted (2) 
    • Endonuclease-mediated (1)  1 citation

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables RNA adenylyltransferase activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    enables RNA adenylyltransferase activity IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    enables RNA adenylyltransferase activity ISO
    Inferred from Sequence Orthology
    more info
     
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
     
    enables nucleotidyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
     
    enables polynucleotide adenylyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
     
    enables transferase activity IEA
    Inferred from Electronic Annotation
    more info
     
    Process Evidence Code Pubs
    acts_upstream_of_or_within in utero embryonic development IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    involved_in mRNA stabilization IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    involved_in mRNA stabilization IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    involved_in mRNA stabilization ISO
    Inferred from Sequence Orthology
    more info
     
    Component Evidence Code Pubs
    located_in cytoplasm IDA
    Inferred from Direct Assay
    more info
    PubMed 
    located_in cytoplasm ISO
    Inferred from Sequence Orthology
    more info
     
    located_in nucleoplasm ISO
    Inferred from Sequence Orthology
    more info
     
    located_in nucleus ISO
    Inferred from Sequence Orthology
    more info
     

    General protein information

    Preferred Names
    terminal nucleotidyltransferase 5C
    Names
    DN-384L23.3
    family with sequence similarity 46, member C
    protein FAM46C
    putative nucleotidyltransferase FAM46C
    NP_001136424.1
    XP_006502275.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001142952.1NP_001136424.1  terminal nucleotidyltransferase 5C

      See identical proteins and their annotated locations for NP_001136424.1

      Status: VALIDATED

      Source sequence(s)
      BC046309, BY170905
      Consensus CDS
      CCDS51017.1
      UniProtKB/Swiss-Prot
      Q5SSF7
      Related
      ENSMUSP00000056872.9, ENSMUST00000061455.9
      Conserved Domains (1) summary
      pfam07984
      Location:17334
      NTP_transf_7; Nucleotidyltransferase

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000069.7 Reference GRCm39 C57BL/6J

      Range
      100375373..100396508 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006502212.4XP_006502275.1  terminal nucleotidyltransferase 5C isoform X1

      See identical proteins and their annotated locations for XP_006502275.1

      UniProtKB/Swiss-Prot
      Q5SSF7
      Conserved Domains (1) summary
      pfam07984
      Location:17334
      NTP_transf_7; Nucleotidyltransferase
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